Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCCACTTTCAAGTACTTCTGAGGAATCTCGCTTTATGAAAATGGAGGAGAACAATTCCAGGAAAACAGGAGATTCTGTCACTGCTCTCAAGGAACTTgtaagtctagctagatttgttgattattgacttcatactctttcatgaagcagaccttatgatgtatataaaaatacactgcagtgcacagttgagggatataacttagtttttcaagcctgtccatctccagcagatggtttagttgggaaagaatcttatgctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G588223_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g42600.1 (Oryza sativa), 5'ss of exon 13
GTTGCCACTTTCAAGTACTTCTGAGGAATCTCGCTTTATGAAAATGGAGGAGAACAATTCCAGGAAAACAGGAGATTCTGTCACTGCTCTCAAGGAACTTgtaagtctagctagatttgttgattattgacttcatactctttcatgaagcagaccttatgatgtatataaaaatacactgcagtgcacagttgagggatataacttagtttttcaagcctgtccatctccagcagatggtttagttgggaaagaatcttatgctcag
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GTTACCAATTGCAAGTACTTCAGAAGAAACTCGCTTTGTGAAGATGGGGGAGAACAATTCCAGAAAAGCAGGAGGTTCTATTGCTGCTCTCAAGGAACTTgtaagtat--cttagattgttggttgtttgacaca-gctctttttcaa-------ttaataacatagttgaaaatgtgttgcag------------------------------------------------------------------------------------
upper sequence: GRMZM2G588223_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g42600.1 (Oryza sativa), 5'ss of exon 14
GTTGCCACTTTCAAGTACTTCTGAGGAATCTCGCTTTATGAAAATGGAGGAGAACAATTCCAGGAAAACAGGAGATTCTGTCACTGCTCTCAAGGAACTTgtaagtctagctagatttgttgattattgacttcatactctttcatgaagcagaccttatgatgtatataaaaatacactg----cagtgcacagttgagggatataacttagt-ttttcaagcctgtcc----atctccagcag-atggtttagttgggaaagaatcttatgctcag
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-------------TGCACAGCTGAGGGATATAACTTAGTTTTTCAAGCTCGGACATCTCCTGATAGTTCAGTAGGCAAAGAAGCTTATGCTGAGg--tcagttagc--aacta--tttcctcattattttacttaaacaagttgttataatgctggggagaatgtctaggatcatgcctttttctcagtatatgtgtatggtgcacaacgatgtattagcagtattgttgtgggacctgcagcatcataattgtgtcgctaac---tttggctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211169586|gb|FL279733.1|FL279733EST: AGAACAATTCCAGGAAAACAGGAGATTCTGTCACTGCTCTCAAGGAACTT GTACAAATTGGTAGGCAAATTCTAGGCAAAGGAGTTGGGTTAACATGGGAA
genomic: AGAACAATTCCAGGAAAACAGGAGATTCTGTCACTGCTCTCAAGGAACTTgtaagtctag ... ttatgctcagGTACAAATTGGTAGGCAAATTCTAGGCAAAGGAGTTGGGTTAACATGGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCCACTTTCAAGTACTTCTGAGGAATCTCGCTTTATGAAAATGGAGGAGAACAATTCCAGGAAAACAGGAGATTCTGTCACTGCTCTCAAGGAACTTgtaagtctagctagatttgttgattattgacttcatactctttcatgaagcagaccttatgatgtatataaaaatacactgcagtgcacagttgagggatataacttagtttttcaagcctgtccatctccagcagatggtttagttgggaaagaatcttatgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA