1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTTTTAGCCACGTCGGCCAAGTTATGTGCTGAGATCTTGGCAGCTGTTTGCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatcaatatgttcagaactcagatggtttcctgcaaatatgtaccgagaaaaatattttgtataatgctgtttttctgtagttgtgatgatttagttttttgtgaacag
species | Zea mays |
transcript | GRMZM2G571844_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATCEST: gi|26559311|gb|CA831546.1|CA831546
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATCEST: gi|149089805|gb|EE179081.2|EE179081
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTTGCA-GGAGATGCGCATCCACCCCAACATEST: gi|89106825|gb|DY577042.1|DY577042
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTT-GCAAGGAGATGCGCATCCACCCCAACAT
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTTAGCCACGTCGGCCAAGTTATGTGCTGAGATCTTGGCAGCTGTTTGCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatcaatatgttcagaactcagatggtttcctgcaaatatgtaccgagaaaaatattttgtataatgctgtttttctgtagttgtgatgatttagttttttgtgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG