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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATTTACACAAATTCTGGTCTTGCTATCTTGGCTTTAACTTCAAGTGCTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccgattcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctctgcatatcattggtgaaaattgtgtatggtagattgttactaaattgttcagtttgctattcatcaatcttatag

Basic information

species Zea mays
transcript GRMZM2G550865_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G550865_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g14980.2 (Oryza sativa), 5'ss of exon 19
ATTGATTTACACAAATTCTGGTCTTGCTATCTTGGCTTTAACTTCAAGTGCTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTC---TGGAAAGgtgagatccgattcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctctgcatatcattggtgaaaattgtgtatggtagattgttactaaattgttcagtttgctattcatcaatcttatag
    |||||||||||||||||| | ||||||||||||||| |||||| |||||||||||| |||||||||||||| |||| ||| || || ||   ||||||||| | ||| |  |  | |   || ||| || ||| | | |  |    |  |      | | |   |     ||  ||  |  | | |||      |||||||||||| || ||  |||||||||| |    |||| |||
---TATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTTCAAATGCTGTTCATCTGCTCTGGAAATGGCCTCGCAATGACCGAAACTCAAGTGGAAAGgttaaatctggattatttacgcacataaatatgc-tcagttttacctacctgctctgtataccaggt---ccaggggcaagcaatttgtgcatatgattgttactaactttttatgtttgctattgac---tcttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67042557|gb|CO468812.1|CO468812
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: gi|74236788|gb|DT644702.1|DT644702
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: gi|18963627|gb|BM660541.1|BM660541
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: gi|19058178|gb|BM736845.1|BM736845
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: gi|87152018|gb|DY396807.1|DY396807
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: gi|32858467|gb|CD998148.1|CD998148
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG