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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtctaaataccagttttgttttataacatctgctgtcagtgttgtttttacattgtgttcactgtttagtgactattaaataggtcttttgca...

Basic information

species Zea mays
transcript GRMZM2G540538_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 6
GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtcta-aataccagttttgttttataacatctgctgtcagtgttgtttttaca-ttgtg-ttcactgtttagtgactattaaataggtcttttgca
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||  ||  |||  | ||||  |   |   |      |    |||   ||    || || | ||  | || ||  | |  | |||  |||  | |  | |    
GCTCATTACTACGAGGATGAGGCTGCTCCCACGGGCACATGTGCTGTCTGTGTTGTTGGTGGTGAAAGgtccgtcatctctattacccctcccggccttactggttatttgtatctgccacttataaacttacgatttacattatccttactcataaggaagattatg---

upper sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 6
GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtctaaataccagttttgttt--tataacatctgct-gtcag-tgttgtttttacattgtgttcactgtttagtgactattaaataggtcttttgca
| ||| ||    |||||||||||||| || ||||| |||||||| || || ||||||||||| || ||||  |||    |   || | ||| |     | ||| |||     || || ||| |  || | || |  | || |  |     || | |  ||   | ||| | |
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagc-tacaatact---ccaccaatttatttatttttggaa

upper sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 6
GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtctaaataccagttttgttt--tataacatctgct-gtcag-tgttgtttttacattgtgttcactgtttagtgactattaaataggtcttttgca-
| ||| ||    |||||||||||||| || ||||| |||||||| || || ||||||||||| || ||||  |||    |   || | ||| |     | ||| |||     || || ||| |  || | || |     |   |  |   | | ||       | ||||| | 
GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAGgtgagttcctaacccacaaatttggaagaatgtaatatccatcagtgagatgtagaattcaaatagctacaatactccaccaattttt-----ttttttttggaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654569|gb|BM499374.1|BM499374
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|9952767|gb|BE639350.1|BE639350
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211299293|gb|FK964182.1|FK964182
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAA                         GTCATTGATTGNCAA-TCTGTCAGCGGCAAACTGTTTACAA-TCTGAGCAT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTG-CAAATCTGTCAGCGGCAAACTGTT-ACAAATCTGAGCAT
EST: gi|28361646|gb|CB240002.1|CB240002
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211406117|gb|FK964261.1|FK964261
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211538004|gb|FL000878.1|FL000878
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGC
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGC
EST: gi|19272533|gb|BM888789.1|BM888789
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|60358287|gb|DN225260.1|DN225260
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211295007|gb|FK964152.1|FK964152
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|28931167|gb|CB334528.1|CB334528
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211297154|gb|FK964173.1|FK964173
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAAC
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAAC
EST: gi|18654717|gb|BM499522.1|BM499522
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211538003|gb|FL000877.1|FL000877
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTRGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCANCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|60355538|gb|DN222511.1|DN222511
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211292867|gb|FK964139.1|FK964139
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|18649011|gb|BM497830.1|BM497830
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|30031919|gb|CB833770.1|CB833770
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211295014|gb|FK964159.1|FK964159
EST:     ACTGCTCCTACTGGCACATGTGCTGGTATGGNGGTGT-GGNGGNTGAAAG                         GGCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATC
genomic: ACTGCTCCTACTGGCACATGTGCTG-TATGT-GTTGTTGGTGG-TGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATC
EST: gi|211403570|gb|FK964246.1|FK964246
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|30087102|gb|CB885310.1|CB885310
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|5555550|gb|AI881501.1|AI881501
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|19351360|gb|BM895892.1|BM895892
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGT
EST: gi|18649868|gb|BM498687.1|BM498687
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGCTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211535006|gb|FL000875.1|FL000875
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211301430|gb|FK964197.1|FK964197
EST:     GAGACTGCTCCTACTGTCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCA
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCA
EST: gi|18649867|gb|BM498686.1|BM498686
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211408681|gb|FK964276.1|FK964276
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCT
EST: gi|18384280|gb|BM417479.1|BM417479
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAA-CTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|20811213|gb|BQ295691.1|BQ295691
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211403575|gb|FK964251.1|FK964251
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|18654570|gb|BM499375.1|BM499375
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|18654716|gb|BM499521.1|BM499521
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211406116|gb|FK964260.1|FK964260
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|26456972|gb|CA828555.1|CA828555
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211408679|gb|FK964274.1|FK964274
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAA-TCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211299298|gb|FK964187.1|FK964187
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCT
EST: gi|211301441|gb|FK964208.1|FK964208
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGGAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAA-CTGGTACAGATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|24773803|gb|CA409057.1|CA409057
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211401021|gb|FK964230.1|FK964230
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTYGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGC
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGC
EST: gi|28361834|gb|CB240190.1|CB240190
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTCATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|78544692|gb|DV622190.1|DV622190
EST:     TGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: TGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|78543652|gb|DV621150.1|DV621150
EST:     CACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: CACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|40335337|gb|CK369407.1|CK369407
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211303574|gb|FK964214.1|FK964214
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTG
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTG
EST: gi|18384281|gb|BM417480.1|BM417480
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211299303|gb|FK964192.1|FK964192
EST:     AGACTGCTCCTACTGGCACATGTGCTGTATGTGGTTGTTGGTGGTGAAAG                         GTCATTGATTG
genomic: AGACTGCTCCTACTGGCACATGTGCTGTATGTG-TTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTG
EST: gi|24961588|gb|CA483591.1|CA483591
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211406111|gb|FK964255.1|FK964255
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGC
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGC
EST: gi|211406118|gb|FK964262.1|FK964262
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGG
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGG
EST: gi|9953243|gb|BE639826.1|BE639826
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
EST: gi|211535002|gb|FL000871.1|FL000871
EST:     GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG                         GTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 32 (downstream exon)
Score: 1118

GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG


Block sizes: 49 (upstream exon), 32 (downstream exon)
Score: 1265

GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG


Block sizes: 49 (upstream exon), 32 (downstream exon)
Score: 1221

GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1711

GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCAGCGGCAAACTGTTACAAATCTGAGCATCTAAAGAGACCAGAGAACTGGGCACTAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAGgtttgttgtctaaataccagttttgttttataacatctgctgtcagtgttgtttttacattgtgttcactgtttagtgactattaaataggtcttttgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG