Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgataaaattgacttgtttctcatggtgtggtagcctgaaaagtatcttatccaatcatgtaggctgttaaaaagtcatgttatttgtgatgtca...

Basic information

species Zea mays
transcript GRMZM2G492252_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78074674|gb|DV503108.1|DV503108
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|60359234|gb|DN226207.1|DN226207
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|91052810|gb|EB163228.1|EB163228
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCCCAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|78123225|gb|DV541609.1|DV541609
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|71448720|gb|DR829770.1|DR829770
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|110517661|gb|EE022248.1|EE022248
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|88758240|gb|DY542381.1|DY542381
EST:     TGATGAGGCATCGCAGCTATCGGTTTTTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|88754551|gb|DY538692.1|DY538692
EST:     TGATGAGGCATGGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|16922425|gb|BM075574.1|BM075574
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAT                         ATAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|71774881|gb|DR972759.1|DR972759
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|60352872|gb|DN219845.1|DN219845
EST:     TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
EST: gi|86467860|gb|DY234230.1|DY234230
EST:     TGATGAGGCATCGCAGCTATCGGTTTTTTCAACTGGCTCCGGCAATGAG                         AAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT
genomic: TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgata ... tgccttacagAAAAAGCAGGATGGTTTAAAAGCAGATGGAACTGGCAAAACTCCACAGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGAGGCATCGCAGCTATCGGTTTCTTCAACTGGCTCCGGCAATGAGgtaactgataaaattgacttgtttctcatggtgtggtagcctgaaaagtatcttatccaatcatgtaggctgttaaaaagtcatgttatttgtgatgtca

- - - - - - GCAGCT