1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTTGAAGAAGGCATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCTgtaagttacttttggcttgaacttatgtactccatctgatcccaagtataatagatctgttaggacattattacatcaacgtggtctctgcgaaagggcc...
species | Zea mays |
transcript | GRMZM2G488458_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACCAGGTGGTAGGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCT GTTGGGCCTTCGACGTTCTTCAGTGCGAAGCAGTTCGAAGTGTTCGATGTGEST: gi|211528927|gb|FL453826.1|FL453826
genomic: AACCAGGTGGTAAGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCTgtaagttact ... tctgctcaagGTTGGGCCTTCGACGTTCTTCAGTGCGAAGCAGTTCGAAGTGTTCGATGTG
EST: AACCAGGTGGTAAGAGAAGAATTATAATMCCTCCAGAGCTTGGTCCTCCT GTTGGGCCTTCGACGTTYTTCAGTGCGAAGCAGTTCGAAGTGTTCGATGTGEST: gi|32840638|gb|CD980319.1|CD980319
genomic: AACCAGGTGGTAAGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCTgtaagttact ... tctgctcaagGTTGGGCCTTCGACGTTCTTCAGTGCGAAGCAGTTCGAAGTGTTCGATGTG
EST: AACCAGGTGGTAAGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCT GTTGGGCCTTCGACGGTCTTCAGTGCGAAGCAGTTCGAAGTGTTCGATGTG
genomic: AACCAGGTGGTAAGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCTgtaagttact ... tctgctcaagGTTGGGCCTTCGACGTTCTTCAGTGCGAAGCAGTTCGAAGTGTTCGATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGAAGAAGGCATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCTgtaagttacttttggcttgaacttatgtactccatctgatcccaagtataatagatctgttaggacattattacatcaacgtggtctctgcgaaagggcc
- - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT