1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaattccttaactttttgtgctatatgcctatccttccttgaatttcatattctttccactttcttgacccaaaatgataatacactatgcat...
species | Zea mays |
transcript | GRMZM2G484880_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|60358481|gb|DN225454.1|DN225454
genomic: TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|32865668|gb|CF005350.1|CF005350
genomic: AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|76016791|gb|DT943961.1|DT943961
genomic: T----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: GGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|71434326|gb|DR815376.1|DR815376
genomic: GGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|6031476|gb|AW076378.1|AW076378
genomic: T----G--AAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|211058547|gb|FK994412.1|FK994412
genomic: T----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AT-CAGGACAAGGAAAAA-GATCATCACATAGTCTACTAEST: gi|32855367|gb|CD995048.1|CD995048
genomic: T----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTA
EST: TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|32913308|gb|CF018120.1|CF018120
genomic: TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGCGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|76912438|gb|DV164732.1|DV164732
genomic: T----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG -----G-ACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|26456042|gb|CA827625.1|CA827625
genomic: T----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|71331879|gb|DR802817.1|DR802817
genomic: T----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTEST: gi|71438521|gb|DR819571.1|DR819571
genomic: T----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
EST: TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG ATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
genomic: TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... atctctgaagATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaattccttaactttttgtgctatatgcctatccttccttgaatttcatattctttccactttcttgacccaaaatgataatacactatgcat
- - - GGAAGA
- - - - AAGAAA
- - - - - - - - - - - TCAGCT