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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttagatatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga...

Basic information

species Zea mays
transcript GRMZM2G477336_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttg--tcgacttcagttatttttagatatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga
||||| || || |||||||| ||||| |||| |||||| ||||| |||| ||| ||||||||||||||  || | | |     |   | |||     | | ||  ||||    ||| |    |  | || |  ||   |                          
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatcaagtgctaaagtgactggat----ctatctaaatttt-tttatttattcttatcatgaaatgattttcag-----------------------

upper sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttaga---tatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||||||||    | || ||  ||||| |   ||||| || | |  || |||   ||   || ||| |     || || ||||| | |||||              
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatcca-ttgcttttataatttatctattgtaacattatgctagtttttaaattctt-----agtca-ttgttcaattcttgcag----------

upper sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttaga---tatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| |||||||||||| |  |||  ||  ||||| |   ||||| || | |  |  |||   ||  ||| | | |     || || |||||  ||||||              
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgt-gtgttccattgcttttataatttatctattgtaacatcatgctagttttaaaatactt-----agtca-ttgttcggttcttgcag----------

upper sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttagatatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  || |   | ||  |    | |||  |       ||  | | |         | |   || |   ||  ||  |           
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattccaactactc--aaatgacacaatctatcgtaaatttgttttatattctt---actatatgattatgatgtatttcag-----------

upper sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 16
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttagatatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga
||||| || ||||||||||| ||||| |||| |||||| ||||| |||| ||| ||||| ||||||||   | ||||  |  |   |  |  ||   | ||| |        |||   | |    |    | |   || |                       
CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttg--aatttcaagtgcta--aagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag--------------------

upper sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttta-gatatctttttttatgttt---tgcccattaaaaacttccttggacag-acacttgttgagttctttggaacattgtcga
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  |  |   | || |   | || ||| | |   |    ||  | |   |  |   |||  |   || |   ||  ||  |           
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag-----------

upper sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttagatatc---tttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga
|||||||||||||| ||||||||||| ||||  ||||| || || ||||  ||||| |||||||| |  |  ||  | | ||| || | |          |  |||||        | || |  ||| |  ||  | | |||  |                     
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaata--tccctctactcaaatttgcag---------------------