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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGgtatgggttgcaatgtagagacgtgcaattttgtttcttcttgtttcctatgtagtcgtgctgatactaaaattatgttgtcag

Basic information

species Zea mays
transcript GRMZM2G477146_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477146_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 6
AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGgtatgggttgcaatgtagag-acgtgcaattttgtttcttcttgtttcctatgtagtcgtg--ctgatactaaaattatgttgtcag-------------
|||||||||||| ||||| |||||||| |||||||| |||||| |||| ||||| || || |||||||| || |||||| |||      || |  |   |  ||| ||| | |   |    |  |  ||    ||   | | | |  | ||   |  ||               
AGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGgtatgagttaatccatacatcattagtcattctgtctgtatatagccctaaaataagtttgatttcaaatttcagttggttcttccattgttatttaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78106037|gb|DV524455.1|DV524455
EST:     TGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTG                         TTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTT
genomic: TGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGgtatgggttg ... atgttgtcagTTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTT
EST: gi|67033412|gb|CO462161.1|CO462161
EST:     TGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTG                         TTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTC
genomic: TGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGgtatgggttg ... atgttgtcagTTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTC
EST: gi|76918522|gb|DV167332.1|DV167332
EST:     TGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTG                         TTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTC
genomic: TGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGgtatgggttg ... atgttgtcagTTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTC
EST: gi|32847829|gb|CD987510.1|CD987510
EST:     TGTTTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCACCTG                         TTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTC
genomic: TGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGgtatgggttg ... atgttgtcagTTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTC