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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggttatgcagtgtcttgaatcttctgaactctgcctctcaaataacaaaccctacttactttctggtcatgcaagctttcatgcagcatgcc...

Basic information

species Zea mays
transcript GRMZM2G471805_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G471805_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 5
--------------------TTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggttatgcagtgtcttgaatcttctgaactctgcctctcaaataacaaaccctacttactttctggtcatgcaagctttcatgcagcatgcc--------------
                    ||||||||||||||||||| |||||||| ||||| |  || ||||| |||||||| |||||||| ||||||||||| |||||||||||   | |||  || |    | |||  ||  |  |   |||||||| |  | ||||||||||     |  |||| |  ||||||||  ||||                
CTCCATCGGCTCTGTCACCGTTGCAGAATTGGACTGGGGTAACAAAGATCATATAAGAGCTGTTGATCCTCCATTCGATTACATCATTGGAACTGATGTTgtaagttt---tctgcgctggc----agctt--gagtttggtgcctcaaatagcttatcctacttact-----gatatgctaaatttcatgcgtcatgatatttcagttgttct

upper sequence: GRMZM2G471805_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 7
--------------------TTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggttatgcagtgtct-tgaatcttctgaactctgcctctcaaataacaaaccctacttactttctggtcatgcaagctttcatgcagcatgcc-------
                    | || ||  |  | |||||  |  |    ||||| ||||| ||||  ||||||||||| ||||| ||||| ||||| ||||||||| | |    |  || |||   ||   | |||| |  |  | |||   ||||        | ||| | |    |    | ||      || | | ||       
TTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtagaacaggcgtttctgcaaacaatgtgaagt--gaatgtcactgaacag------ttaactctttaaaaaaaataactcattaacaacgtaccaatttaa

upper sequence: GRMZM2G471805_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 7
--------------------TTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggt-tatgcagtgtcttgaatcttctgaactctgcctctcaaataacaaaccctacttactttctgg--tcatgcaagctttcatgcagcatgcc
                    | || ||  |  | |||||  |  |    || || ||||| ||||  ||||||||||| ||||||||||| ||||| ||||||||| | |   | ||  |      ||   | |||| |        |  | || ||       ||| || |||   | ||  ||  ||   |     |    
GTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCACATTAAGGCTGTTGGTCCTCCATTTGACTACATTATTGGCACTGATGTTgtaagtgtagaacaggcctttctgcaaacaatgtgaagtgaatgctacttacaaaaatgtgattttaattgctgaaattatcaaaaattggttattttag---

upper sequence: GRMZM2G471805_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 5'ss of exon 8
--------------------TTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggttatgcagtgtcttgaatcttctgaactctgcctctcaaataacaa-accctacttactttctggtcatgc---aagctttcatgcagcatgcc
                    | |||||  |||||||||| ||  |||| ||||| ||||| ||| | || |||||||||| ||||||||| ||||| |||||||||||  |     ||  ||||   |      ||          ||  | || |   | ||||| |  |||  |  |     |||  |  ||  |  |    
TTCATTTGGTTCTGTCCAGGTAGCAGAGCTGGACTGGGGAAATGAAGATCATATAAAGGCAGTTAATCCACCATTTGATTTCATTATTGGCACTGATGTTgtaagtttactggatgagattctttttttgcaaaaaaaaaaaaatgcaggttaccatgacttactttcagtctcattttctgaaaagagtgaataaataa----

upper sequence: GRMZM2G471805_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 5'ss of exon 8
--------------------TTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggttatgcagtgtcttgaatcttctgaactctgcctctcaaataacaaaccctacttactttctggtcatgc---aagctttcatgcagcatgcc-
                    | |||||  |||||||||| ||  |||| ||||| ||||| ||| | || |||||||||| ||||||||| ||||| |||||||||||  |     ||  ||||     || || |              || ||   | ||||| |  |||  |  |     |||  |  ||  |  ||    
TTCATTTGGTTCTGTCGAGGTAGCAGAGCTGGACTGGGGAAATGAAGATCATATAAAGGCAGTTAATCCACCATTTGATTTCATTATTGGCACTGATGTTgtaagtttactggatgagattctt----tttttgcaaaaaaaaagaaggttaccatgacttactttcagtctcattttctgaaaagagtgaataaataatttta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211175782|gb|FL245447.1|FL245447
EST:     ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTT                         ATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttgg ... cacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA