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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGGTCATTTGTTTGATTATTCATGTGCTATTAGTATCTATGAAATGTGTGTTTCAGAACCAATGGCAACAgtgagtgctttctgatctatttggttaacatcaatagtttgaaattaaaatgtctttgctaacaatggatggatctgtagtaacacttcttatttgttttgtattgttcattgcag

Basic information

species Zea mays
transcript GRMZM2G470438_T06
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470438_T06 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 6
ACGTGGTCATTTGTTTGATTATTCATGTGCTATTAGTATCTATGAAATGTGTGTTTCAGAACCAATGGCAACAgtgagtgctttctgatctatttggttaacatcaatagtt-tgaaattaaaatg-tctttgctaacaatggatggatctgtagtaacacttcttatttgttttgtattgttcattgcag
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ACGTGGTCATTTGTTTGATTACTCATCTGCTGTTGTGATCTATGAAATGTGTGTTGAAGAACCAATGGCGACAgtgagcccttgac-atcttttatttcaacaccaatgttcacgaaataataacgataagtatctttgatg-acagaacaaaagtaccagtt--tagttgtatttt----ttccctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86467513|gb|DY233883.1|DY233883
EST:     CATGTGCTATTAGTATTTATGAAATGTGTGTTTCAGAACCAATGGCACCA                         GTACAAAATGTTAGGAATCAAGAGAAGCTAAAATACCCCCCATATCCATTA
genomic: CATGTGCTATTAGTATCTATGAAATGTGTGTTTCAGAACCAATGGCAACAgtgagtgctt ... ttcattgcagGTACAAAATGTTAGGAATCAAGAGAAGCTAAAATACCCCCCATATCCACTA