1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCTTTGTTGAGAAGCTTGTTCATTATCCTTTTCAGTTGTTCAGTGTACGCATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaaattctctggtctgcaaaactgagggcaaacatgctatattatggagccaatcacaccctaagatgacaatgaattctttcaattccag
species | Zea mays |
transcript | GRMZM2G468693_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAATGAGAGGAGAGTATCATCTTCTAAG GAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCTEST: gi|166433548|gb|EG132026.1|EG132026
genomic: TAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaa ... tcaattccagGAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
EST: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAG GAGTCAAGGGTGTTGTTCAAGGCATGEST: gi|60344779|gb|DN211752.1|DN211752
genomic: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaa ... tcaattccagGAGTCAAGGGTGTTGTTCAAGGCATG
EST: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAG GAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCTEST: gi|60346715|gb|DN213688.1|DN213688
genomic: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaa ... tcaattccagGAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
EST: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAG GAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
genomic: CATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaa ... tcaattccagGAGTCAAGGGTGTTGTTCAAGGCATGTTCCTGAATAGAGAATGCAGTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTTGTTGAGAAGCTTGTTCATTATCCTTTTCAGTTGTTCAGTGTACGCATCCTGAGATGTACAATCCTTTAATGAGAGGAGAGTATCATCTTCTAAGgtaacgagaaattctctggtctgcaaaactgagggcaaacatgctatattatggagccaatcacaccctaagatgacaatgaattctttcaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA