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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGATCTTGCTACTAGGGCTGGACAAGAGCTTTTGGACATGGTTGACAGTTCGCCCGTTGTTGCGATAAAGAGCCTAAAAGTATTTGACTTCCAAGgtacgtcatctaatctctgttcaatcttcttcctggaaaacagtgagttactaaaagtgtgtcgtgataactgtgttgctgaaatttgtgttgtag

Basic information

species Zea mays
transcript GRMZM2G468475_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G468475_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g11540.1 (Oryza sativa), 5'ss of exon 7
---AATGATCTTGCTACTAGGGCTGGACAAGAGCTTTTGGACATGGTTGACAGTTCGCCCGTTGTTGCGATAAAGAGCCTAAAAGTATTTGACTTCCAAGgtacgtcatctaatctctgttcaatcttcttcctggaaaacagtgagttactaaaagtgtgtcgtgataactgtgttgctgaaatttgtgttgtag
   ||||||||||| || |   |||| || ||||| ||||||||||| |||  | ||||  |  |||||||||||||||||||||||| |||||||||||||| ||  | |  |  ||      || |     ||| |     ||| ||    |   ||||   | | | |  |  | ||  ||| |     |   
TGGAATGATCTTGCCACAACTACTGGTCAGGAGCTCTTGGACATGGTAGACTCTGCGCCTATCATTGCGATAAAGAGCCTAAAAGTATCTGACTTCCAAGgtatgtt-tgtgttacct------tcctgcatgtggtaggatctgaattggcgattatgtgc--taacagcattactactataatgtcgacag---