1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATTATGTGGTTGCAGCATTTGTGTGATGCACACCAGGAGATGCAATCATGGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAGgttgtgatctttgcacctgtagtaacttttattccagcagtcttgacatatatgaagttataacctctgagactttcttacag
species | Zea mays |
transcript | GRMZM2G462803_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAG GCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCGEST: gi|94472828|gb|EB701786.1|EB701786
genomic: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAGgttgtgatct ... tttcttacagGCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCG
EST: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAG GCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCGEST: gi|76012408|gb|DT939578.1|DT939578
genomic: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAGgttgtgatct ... tttcttacagGCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCG
EST: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAG GCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCGEST: gi|32827919|gb|CD967597.1|CD967597
genomic: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAGgttgtgatct ... tttcttacagGCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCG
EST: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAG GCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCG
genomic: GGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAGgttgtgatct ... tttcttacagGCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAGGAGCATGTTACTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTATGTGGTTGCAGCATTTGTGTGATGCACACCAGGAGATGCAATCATGGGCTGAAGCAGCACAATGTGCAGTTGCTGCAGCTGGCGTGATCATGCAGgttgtgatctttgcacctgtagtaacttttattccagcagtcttgacatatatgaagttataacctctgagactttcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG