Sequence
atgc intronic sequence ATGC exonic sequenceCTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGGATACGCTCAATGACTCAAAAGCCACATATATGTGCTACTTGGGGAGATACTGGTCATGTTCAGgtgattcagacctcagatttctttttcattttatgtgatcgttggttgcctaaacctgtacatttaccttgtacatcatttttccttttctagttgccta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g03990.1 (Oryza sativa), 5'ss of exon 6
CTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGGATACGCTCAATGACTCAAAAGCCACATATATGTGCTACTTGGGGAGATACTGGTCATGTTCAGgtgattcag---acctcagatttctttttcattttatgtgatcgttggttgcctaaacctgtacatttaccttgtacatcatttttccttttctagttgccta-
||||||||||||||||||||||||||||||||||| || ||||| |||| ||| | |||||||||||||| || |||||||| || |||||||||||||| || | || | | || || |||| | ||| | | || || | | || || | ||| | ||| | ||
CTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGgtattttactttgtcttgcaatactcctttttttt-cactctttttgatcgaagaagtctatttttggtccctg---agttctttgcgaggtctgatctcccct
upper sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g03822.1 (Oryza sativa), 5'ss of exon 6
CTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGGATACGCTCAATGACTCAAAAGCCACATATATGTGCTACTTGGGGAGATACTGGTCATGTTCAGgtgattcag---acctcagatttctttttcattttatgtgatcgttggttgcctaaacctgtacatttaccttgtacatcatttttccttttctagttgccta
|||||||||||||||||||||||||||||||||| || ||||| |||| ||| | |||||||||||||| || |||||||| || |||||||||||||| || | || | | || || ||||| | ||| | || || | | || || || || | | | | |||
TTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGgtattttactttgtcttgcaatactccttttttttactc--tttttgatcaaacaagtctatttttggtccctgagt-tctttgcgaggtctgaactccccttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33095104|gb|CF055098.1|CF055098EST: CTCAAAAGCCACATATATGTGCTGCTTGGGGAGATACTGGTCATGTTCAG GTGTGGGACTTGAGCTCCTTCCTTAATTCTTTAGCAGAGTCAGGGGCATCT
genomic: CTCAAAAGCCACATATATGTGCTACTTGGGGAGATACTGGTCATGTTCAGgtgattcaga ... aaatatgcagGTGTGGGACTTGAGCTCCTTCCTTAATTCTTTAGCAGAGTCAGGGGCATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGGATACGCTCAATGACTCAAAAGCCACATATATGTGCTACTTGGGGAGATACTGGTCATGTTCAGgtgattcagacctcagatttctttttcattttatgtgatcgttggttgcctaaacctgtacatttaccttgtacatcatttttccttttctagttgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT