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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCCTGCAATGCGCATACCATATGTGACCCTGAACTTAGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgctaaactattagctatatattcatttatctattatctttaccagattagagcaattaatatatcaccaccttctctattcatccattttttttgggtatattcag

Basic information

species Zea mays
transcript GRMZM2G457881_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G457881_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g49730.3 (Oryza sativa), 5'ss of exon 6
TTTGCCTGCAATGCGCATACCATATGTGACCCTGAACTTAGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgctaaactattagctatatattcatttatctattatctttaccagattagagcaattaatatatcaccaccttctctattcatccattttttttgggtatattcag
||||||||||| || |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||  |||| ||||||||||||||||  ||| |||  |  |||        |||||   | ||  |||||   | ||||  | || |||||| || |  |   |     | |||| |   |||   |||||| | ||
TTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAGgtgatatactattccttta--------ttcatc-gtttagcatcttcctccgattttatcatttaataaataattattat-----tgcatctaccctttcctggtatacttag

upper sequence: GRMZM2G457881_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g03730.t01 (Vitis vinifera), 5'ss of exon 6
TTTGCCTGCAATGCGCATACCATATGTGACCCTGAACTTAGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgctaaactattagctatatattcatttatctattatctttaccagattagagcaattaatatatcaccaccttctctattcatccattttttttgggtatattcag
 |||| |||||||| |||||||| |||||   |||||| || || ||||| |||||||| || |||||||| || ||||||||||||||||    ||||    || | | |  |  |   |  || | | ||| ||      || |  |   ||| ||    |||   ||                                
CTTGCATGCAATGCTCATACCATTTGTGATGGTGAACTAAGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAGgtaa-gtgct---ttagtggattaacttgtgtcaatttttcatccttctgctgttggctctgctaa-atgattccagtgtcatag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149023564|gb|EE045895.2|EE045895
EST:     AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAG                         TTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCG
genomic: AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgct ... gtatattcagTTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCG
EST: gi|71322965|gb|DR798157.1|DR798157
EST:     AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAG                         TTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCG
genomic: AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgct ... gtatattcagTTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCG