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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCTGATCTGGTTGAAAAGAAGAAGAAGATGCGAAATTGGCTTGACTATTACCTACTAAAGTATGAGCGAAATTCATCATTGAGGCCTACCACAAAGgtttgtcggcaagaataattagatagctactttgttttttatgtagattttggtttgtgcatctgtaaactggagtactgtatcagtatcttttgttttaaatccttgtgcttcccctgagctttgttgcag

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 5'ss of exon 5
ACTTGCTGATCTGGTTGAAAAGAAGAAGAAGATGCGAAATTGGCTTGACTATTACCTACTAAAGTATGAGCGAAATTCATCATTGAGGCCTACCACAAAGgtttgtcggcaagaataattagatagctactttgttttttatgtagattttggtttgtgcatctgtaaactggagtactgtatcagtatcttttgttttaaatccttgtgcttcccctgagcttt-gttgcag
|||||||||||||||||| |||||||||||  ||| |||||||||||| || ||||  || ||||||||  ||||| |||||   ||||| ||||| |||||| ||| || | |   |     |    | ||| ||||| || |  ||| |  | |         || | | |  |  |           |||  |||||| ||  ||| |  |   ||   ||| ||| |||
ACTTGCTGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGCTTGATTACTACCAGCTCAAGTATGAAAGAAATCCATCAAAAAGGCCCACCACTAAGgttagtctgccatatggacct--tgatcaatttatttttcatttcaattataatat---------tacattaggatctt----------ttttctttttaattctctgtccccctgttggatttttgttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105551|gb|DV523969.1|DV523969
EST:     AT-ACCTACTAAAGTATGAGCGAAATTCATCATTGAGGCCTACCACAAAG                         ACTGGCTTTCTTGGATGTTTTGGTTCCA-GGTGGATGCTATTGACTATTAC
genomic: ATTACCTACTAAAGTATGAGCGAAATTCATCATTGAGGCCTACCACAAAGgtttgtcggc ... tttgttgcagACTGGCTTTCTTGGATGTTTTGGTTCCAAGGTGGATGCTATTGACTATTAC