1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGGCAACACCAATGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagtgattatggcgcgtttggcaattttgcgtgccttgctcgcctcaccttgccaagcaaggccagctttggcaggagtggaaaacagatcttg...
species | Zea mays |
transcript | GRMZM2G452633_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCNCCAAAGCTTGGTCGGTCTAAAANCAAGEST: gi|5895672|gb|AW036918.1|AW036918
genomic: CCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|211489831|gb|FL359783.1|FL359783
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|30088240|gb|CB886445.1|CB886445
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: GTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|211020738|gb|FL318488.1|FL318488
genomic: GTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAA-GTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|211389178|gb|FL466818.1|FL466818
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|33092930|gb|CF052924.1|CF052924
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAA-CAAGEST: gi|211190617|gb|FL326446.1|FL326446
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAA-GTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|211322617|gb|FL345965.1|FL345965
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|32934224|gb|CF039036.1|CF039036
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|211526230|gb|FL353915.1|FL353915
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAGEST: gi|60358926|gb|DN225899.1|DN225899
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
EST: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAG ATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
genomic: TGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgtagATCCCCCCAACCAGAGCTAAATCACCAAAGCTTGGTCGGTCTAAAAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGGCAACACCAATGCCAAGCTTTTATAAGGAACCAACCCCTGCCAAGGTTGAATTGAAAAAGgtaacttagtgattatggcgcgtttggcaattttgcgtgccttgctcgcctcaccttgccaagcaaggccagctttggcaggagtggaaaacagatcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacag