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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGAAAAACTTTAGCAAGATTGCAAGGGATTTGGTGCGTTGTATGCAAAAAATAGATGGTGACTATTATCCTGAGgttagccttagtatagagatgattgaatgtagcttggtttgaaaccattctgattaccaaggatgtcacaaattatgcag

Basic information

species Zea mays
transcript GRMZM2G452580_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452580_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g48990.1 (Oryza sativa), 5'ss of exon 6
GGCTGGAAAAACTTTAGCAAGATTGCAAGGGATTTGGTGCGTTGTATGCAAAAAATAGATGGTGACTATTATCCTGAGgttagccttagtatagagatgattgaatgtagcttggtttgaaaccattctgattaccaaggatgtcacaaattatgcag
|| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||  |  ||| |   || ||       |   || |  |||| || ||| |||| |||||||  || |  |||| ||||||
GGTTGGAAGAACTTTAGCAAGATCGCAAGGGATTTGGTGCGCTGTATGCAGAAAATAGATGGTGATTATTATCCTGAGgtaggtgttacttatgaaat-------ttaggcctattttgtaatcatgctgactaccaagcttgccctaaatcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355768|gb|CD440125.1|CD440125
EST:     AAAATAGATGGTGACTATTATCCTGAG                         ACATTACATCAAATGTTTATTGTAAATGCGGGACCTGGTTTCAAGCTGATA
genomic: AAAATAGATGGTGACTATTATCCTGAGgttagcctta ... aattatgcagACATTACATCAAATGTTTATTGTAAATGCGGGACCTGGTTTCAAGCTGATA