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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGGGGATGCTGATGGAAGATCAGATGAAGAAGTTGCAGATGAATATTGGGCAAATCATATTGCCAGAAATAATTCAATCATTGTTGATGTATGCCAGgttagttctaaacctgtgaatcacttgtcttactgttgtgatgctttggctttagataaatgctaatagccattgcaatttgggaccatcatgtttctct...

Basic information

species Zea mays
transcript GRMZM2G451357_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451357_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA19G30650.1 (Glycine max), 5'ss of exon 8
TTCAGGGGATGCTGATGGAAGATCAGATGAAGAAGTTGCAGATGAATATTGGGCAAATCATATTGCCAGAAATAATTCAATCATTGTTGATGTATGCCAGgttagttctaaacctgtga---atcacttgtcttactgttgtgatgctttggctt-tagataaatgctaa-tagccattgcaatttgggaccatcatgtttctct
 ||  | ||||| |||||  |  | ||||||||||| || || |||||||||||||||||||||||  | ||| |||| || |||||||||||||||||||| |||   ||| | || |    | | || |  || |||      |  |  | |  | | | |||   |  | | ||     |  |   || | |||  ||    
ATCTCGAGATGCCGATGGCCGGCCTGATGAAGAAGTGGCTGACGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGgtgagtc--aaatcagtaattagtaaattattgtaatgtgtcatagactcagttaatggcttaatatcagcttgtcagaaacagctttaactagcatagtta---

upper sequence: GRMZM2G451357_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G27790.1 (Glycine max), 5'ss of exon 8
TTCAGGGGATGCTGATGGAAGATCAGATGAAGAAGTTGCAGATGAATATTGGGCAAATCATATTGCCAGAAATAATTCAATCATTGTTGATGTATGCCAGgttagttctaaacctgtgaatcacttgtcttactgttgtg----atgctttggctttagataaatgctaa-tagccattgcaatttgggaccatcatgtttctct
 ||  | |||||||||||  || | ||||||||||| || || |||||||||||||||||||||||  | ||| |||| || |||||||||||||||||||| |||   ||| | || | |      | ||  |  ||||    |  ||  |    | | | |||   || ||  ||     |  |   || | |||  ||    
ATCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGACGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGgtgagtc--aaatcagtaatttgtaaatttttgtaatgtgtcatagactcagttaatggcttaatatcaactattcagaaacagctctaactagcatagtta---

upper sequence: GRMZM2G451357_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv00s0174g00150.t01 (Vitis vinifera), 5'ss of exon 8
TTCAGGGGATGCTGATGGAAGATCAGATGAAGAAGTTGCAGATGAATATTGGGCAAATCATATTGCCAGAAATAATTCAATCATTGTTGATGTATGCCAGgttagttctaaacctgtgaatcacttgtcttactgttgtgatgctttggctt-tagataa-atgctaatagccattg-caatttgggaccatcatgtttctct------
 ||  | ||||||||||| ||  | |||||||||||||| |||||||||||||||||||| |||||  | ||| |||| || || |||||||| ||||| || ||||||| |    ||||      || |||   |   ||| | ||||    || ||   |||||| |     ||  | ||  |  | ||    |  | | |      
GTCTAGAGATGCTGATGGGAGGCCTGATGAAGAAGTTGCTGATGAATATTGGGCAAATCACATTGCTCGCAATGATTCTATAATAGTTGATGTGTGCCAAgtaagttctata---atgaa------gttttaacttcaagatacgttggagaatatatggtatgctatttttttttttcgatcagtaatcaaagagaatgtatcataaa