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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttcttttctaatttatctctgcttttagacccattttctattttgtggaagacaggtta...

Basic information

species Zea mays
transcript GRMZM2G448913_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttcttttctaatttatctctgcttttagacccatt--ttctattttgtggaagacaggtta--
||||||| |||||||||||||||||||| |||||||||||||||||| | || | ||||||  | |||||| ||||||||||||||||||||||||||| ||| ||   |  |  |||| ||||||| |   ||    || || | || |  |   | | |   |||  |||  ||  ||   |||  |   |     |||   
TACTTCTTAGTTTGATTGAGTACAAGACACTTGTGATGCGTGGGGATATTGAACGTGCAAATGATATTTTACCATCCATACCAAAGGCGCAATATAATAAgttagttgctgact-tttgatccaaaaca---atgagtttcttttattttggtacctgtttctctttgaacctgttgatttggtttcttaataattttgttcct

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g05180.4 (Oryza sativa), 5'ss of exon 1
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttcttttctaatttatctctgcttttagacccatt--ttctattttgtggaagacaggtta--
                      |||||| |||||||||||||||||| | || | ||||||  | |||||| ||||||||||||||||||||||||||| ||| ||   |  |  |||| ||||||| |   ||    || || | || |  |   | | |   |||  |||  ||  ||   |||  |   |     |||   
----------------------CAAGACACTTGTGATGCGTGGGGATATTGAACGTGCAAATGATATTTTACCATCCATACCAAAGGCGCAATATAATAAgttagttgctgact-tttgatccaaaaca---atgagtttcttttattttggtacctgtttctctttgaacctgttgatttggtttcttaataattttgttcct

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttctt----ttctaatttatctctgcttt-tagacccattttctattttgtggaagacaggtta
| ||| | || ||||||||||||||||| |||||||||||||| ||||||||    || ||  ||||| || |||| || || || | |||  |||| |||  |  || |   |  ||||| ||| | |   ||||| ||| | |     |    |  |||   || | | |  |   |||    || || | |   ||||  | 
TGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCCAAAGAGCATCATAACAGg--taggact--taccttgttgcaagacaatgattgattttctttcaatatgtagaaatatgcttgatatgtgtagaaattaaaaatgtttttggtaacagaat-

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgt--ttgtgattatcagtt----tgttccaaaatatatattgactttttcttttctaatttatctctgct---tttagacccattttctattttgtggaagacaggtta
||||| | ||||||||||| |||||||| ||||| |||||||| ||||||||    || ||  ||||| || |||| || || || | |||  |||| ||||  | || ||| || |||    |||| |  |||     ||   || ||  |||  || |||| | || |   ||| ||   |   | | || |  ||           
TACTTTTAAGTTTGATTGAATACAAGACACTTGTCATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGCATCATAACAGgtagtagttattttctgttatgttgttacggaatgacccttactttctttatttagaaattatgtttgatatgttttgagaaaggcttttttgtaagggt---------

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttcttttctaatttatctctgcttttagacccattttctattttgtggaagacaggtta-----
| ||| | || ||||||||||||||||| |||||||||||||| ||||||||    || ||  | ||| |  |||| || || || | |||  |||| ||||    | |  | |  ||||   |   |  |   | |   ||  ||||||      ||  |   || | |     ||  ||| |   | ||   |   |      
TGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGATATTCTGCCATCAATCCCCAAAGAGCATCATAACAGgtagaagttagttaccttgtgttacgttgcaagataatgattaattttctt-----tcaatatgttgaaatatgcttgatatgtgtagaaattaaaaatgctttt

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatat-tgactttttcttttctaatttatctctgcttttagacccattttctattttgtggaagacaggtta--
|  | || ||  |||||||||||||||| ||||||||||| || ||||| ||  | || |   |||| ||| |  | || || || |  ||  |||| |||| ||  |  |||  ||   | |    | |   | ||| |  ||||||       |     || | |  ||    | ||   ||||           |  |  
TGTTGCTAAGCCTGATTGAGTACAAGACTCTTGTGATGCGGGGTGATTTAGACAAAGCCAGTGAAATCTTACCTACAATTCCTAAAGATCAGCATAACAGgtatgctag-atc--ttaacttctgtgtgtgcttgtgattcattctttatcgcacttctcttgttatgtgatatgtcttaggtttttcatttctttaggaagg

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 21
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaa-----aatatatattgactttttcttttctaa---tttatctctgcttttagacccatttt--ctattttgtggaagacaggtta-----------------------------------------------
||||| | |||||||||||||||||||| |||||||||||||| |||||||| || || ||  || | ||| | || || || |||| |||  ||||||||| || || | |   ||   ||  |       || |  | || | |    ||  |||   | ||||   | |   | |    |||    | ||||    ||  || |                                                  
TACTTTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGAGATTTGGAACAGGCTAATGAAGTCTTACCTTCAATTCCTAAGGAGCACCATAATAGgtatgagaatgtgctttccctcgcattatggttacagctggattatggtgttagtaaacatgtatccaaggtcacataatggtttaaattgttttcctaaattcacgcattcctacttttctgattctcgacttcaaaatcctgttcgttttgtcag

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgatta-tcagtttgttccaaaatatat--attgactttttcttttctaatttatctctgcttttagacccattttctattttgtggaagacaggtta
| || || ||  ||||||| |||||||| ||||||||||| || |||||||||   || ||  |||||||| |  | || || || | |||  |||| | || ||| ||   | | |||| || ||| | | |  ||| |||| |  ||   |  ||||   |||| |||   | | | ||   |  | ||    |    |  
TGCTGCTTAGCCTGATTGAATACAAGACTCTTGTGATGCGAGGCGATTTGGATAGAGCCAATCAAATTTTACCTACAATTCCTAAAGAGCAGCATAACAAgtatgttataggttattttggtctaaattttttgcattcacttataattcattc-tttactactgcattttatctcttgttgcctgctatgtcctatgaat--

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgt-ttgtgattatcagtttgttc----caaaatatatat-tgactttttcttttctaatttatc-tctgcttttagacccattttctattttgtggaagacaggtta
||||||| | |||||||||||||||||| ||||| |||||||| || ||  | | |||||   |||||||| | |  || ||  | | ||| || |||||||  ||  |||   ||| |  |     |||| ||  | | ||| |||     |    || | || || | || ||| |  ||||  ||  |||    |         
TACTTCTCAATTTGATTGAGTACAAGACACTTGTAATGCGTGGAGACTTTCAACGTGCAAGTGAAATTTTACCTTTGATTCCTCAAGAGCACTACAATAGgtactgaaattcatagtatactgacagcaaagtaattgtgtgaatttgatggtgtagatgtgtcctcaggttgtagtctgatttgatagcttgctagatt-------

upper sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCAAAGGCGCAATATAATAGgtttgtgattatcagt--ttgttccaaaatatatattgactttttcttttctaatt-tatctctgcttttagacccattttctattttgtggaagacaggtta
||||||| |||||||||||||||||||| |||||||||||||| ||  |||| |  || ||  || ||||| | || || || || |  ||  |||||||||   |   ||    |   ||||   ||| |    |  | |           | ||  |     |  ||| || |   ||  | ||||||||   |     ||
TACTTCTCAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGACCTGGAACGGGCCAATGAACTTTTACCTTCAATTCCCAAAGAACATCATAATAGgtaaatttctactgttggctgttggtaaacaacagtaaaataagaggcaaacacttacaatgtagtatttggatc---ttcatgttttgtggggaattttgta