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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatccttccatcagtgtcatttttctttgcaagttcatacctgttgaacctgtagccactaaatcagatatttgttatccag

Basic information

species Zea mays
transcript GRMZM2G447433_T08
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g27040.1 (Oryza sativa), 5'ss of exon 5
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaa-tccttccatcagtgtcatttttc----tttgcaagttcatacctgttg-aacctgtagccactaaatcagatattt-gttatccag
||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | ||||||||  |||||     |||||| |  |      | |  || |||||      || |   | ||   |   ||  |    |||  || | |||
TTCGGTACTTATAACTGCTGTGATTACTGATGCAATTAAGGATGGTGTTGGTCGTCCTCGCCCAGATTTCTTTTGGCGTTGTTTCCCTGATGGAATACCTgtaatctccttgtgctagtgtcctgatctcagatattaaacttcatgtagtctgcaggttatattgaagtaacaaatcgtttcatttttcag

upper sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g27030.2 (Oryza sativa), 5'ss of exon 4
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaa-atccttccatcagtg-tcatttttcttt----gcaagttcatacctgttgaacctgtagcca--ctaaatcagat-atttgttatccag-------
||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||| || ||||||| ||||||   | | |  | |||| |||      |||| ||||| ||| | || | ||||       ||  || | | |||| || |           
TTCGGTGCTTATAACTGCTGTGATTACTGATGCAATTAAGAATGGTGTTGGTCGCCCACGCCCAGATTTCTTTTGGCGTTGTTTCCCTGATGGAAAGCCTgtaatatccttttgtaaattctgatttctctccttaagcaatttcattcctatcga-catgtacttggtttagttctgtttatttcttttttttttacaga

upper sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G41580.1 (Glycine max), 5'ss of exon 4
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt-----------ccatcagtgtcatttt-------tctttgcaagttcatacctgttgaacctgtagccactaaatcagatatttgttatccag--------------------
||| || || || ||||| ||||| |||||||| || ||||||| |||||| || ||  ||||||| ||||| ||||||||||| |||||||| |||   || | |  |            |   ||   |  | ||       ||||| | |  | |||  |  ||  | | ||   | | ||    | | |   |  ||                      
TTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGATGCTGTTGGACGGCCAAGGCCAGACTTCTTCTGGCGTTGTTTCCCTGATGGAAAAGGGgtgagttttcagttttatggactgccaagatagtcttgttaatatctttaccatgtgatatgtactg--cttttatgtagttaactgcacaataaatgccccattggtgcatgacatattcag

upper sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G18450.1 (Glycine max), 5'ss of exon 4
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcct----tccatcag-tgtcatttttctttgcaagttcatacctgttgaacctgtagccactaaatca-gatatttgttatccag--------
||| || || || ||||| ||||| || ||||| || || ||||||||||| || || || ||||||||||| ||||||||||| |||||||| |||   ||   | ||    |  || |  |  ||   ||   |  |      ||||   |||    ||||| |   ||  | | ||||  |||             
TTCTGTACTCATTACTGCGGTGATAACGGATGCTATCAAAGATGGTGTTGGACGGCCACGCCCAGATTTCTTCTGGCGTTGTTTCCCTGATGGAAAAGGGgtgggttctcaattttatgaactaccaagatttccttaatacctttaccatgtga-tacgtagctaaagaaatatggtattgattactgttatgttcag

upper sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G25650.1 (Glycine max), 5'ss of exon 4
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcct----tccatcag-tgtcatttttctttgcaagt--tcatacc-tgttgaacctgtagccactaaatcagatatttgttatccag----------------------------
||| || || || ||||| ||||| |||||||| || ||||||| |||||| || ||  ||||||| ||||| ||||||||||| |||||||| |||   || | |  |    |  ||    || ||   |   |||  | |     |||| |||   || |   ||   ||  | || ||  || |    |                             
TTCTGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGATGCTGTTGGACGGCCAAGGCCAGACTTCTTCTGGCGTTGTTTCCCTGATGGAAAAGGGgtgagttttcaattttatggactgccaagatatcttgttaatatctttaccatgtgatacgtactgcttttatgt-agttaactgctcaataaacgccccattggtgcatgacatgtttag

upper sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
lower sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 4
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatccttccatcagtgtcatttttctttgcaagttcatacctgttgaacctgtagccactaaatcagatatttgttatccag
 || || |||||||| | ||| || || ||||| || ||||| | ||||||||| ||||| || |||||||||||||||||||| ||||| || | |   ||||      |        |   ||    ||  ||   | |    | | |||    |     | |||     |  |  ||     
CTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGgtaagcagcacacatctccttgcttactcttataaaaccttg---gataaactctgactggttgaatttctgaaattctag----

upper sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 3
TTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGATGGTGTTGGTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatccttc----catcagtg----tcatttttctttgcaag----ttcatacctgttgaacctgtagccactaaatcagatatttgtt-atccag---------------------------
 || || || || || || || || |||||||||||||| |||| |||||| || ||||| ||||| ||||||||||||||||| ||| |||| |||   ||     || |    |||||       | |||||| ||  ||||    || |   ||||| |   | | |   ||  |||||   | |  | | |||                            
CTCTGTACTGATCACGGCAGTTATAACTGATGCAATTAAAGATGCTGTTGGCCGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTAATGGGAAAGGGgtgggctctccattacatcaactatctttatttttgttcccaagattgttgacttctgtttatttttttgtt-cttgatcagtcctatactcagccaacatatatttggtgcatggattattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211211372|gb|FL470796.1|FL470796
EST:     GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCT                         AATTTTAATCATATAACCACCGACGTGATATCCCATGGAGAAAAGAGTGTC
genomic: GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt ... tgttatccagAATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
EST: gi|211272973|gb|FL366561.1|FL366561
EST:     GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCT                         AATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
genomic: GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt ... tgttatccagAATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
EST: gi|10697618|gb|BE997342.1|BE997342
EST:     GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCT                         AATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
genomic: GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt ... tgttatccagAATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
EST: gi|32932160|gb|CF036972.1|CF036972
EST:     GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCT                         AATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
genomic: GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt ... tgttatccagAATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
EST: gi|71439499|gb|DR820549.1|DR820549
EST:     GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCT                         AATTTTTATAATATAACCACCGATGTGATATGCCATGG
genomic: GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt ... tgttatccagAATTTTAATAATATAACCACCGATGTGATATGCCATGG
EST: gi|32932582|gb|CF037394.1|CF037394
EST:     GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCT                         AATTTTAATAATATAACCACCGATGCGATATGCCATGGAGAAAAGAGTGTC
genomic: GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt ... tgttatccagAATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
EST: gi|78114830|gb|DV533218.1|DV533218
EST:     GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCT                         AATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC
genomic: GTCGCCCTCGGCCAGATTTCTTTTGGCGTTGTTTTCCTGATGGCAAACCTgtaaatcctt ... tgttatccagAATTTTAATAATATAACCACCGATGTGATATGCCATGGAGAAAAGAGTGTC