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ATGGGGTGGACCTCTCCCTCAGACTTGGCTTGATGACCAACTAGTTCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttctaccattgtagcatttttggattttgtgcagttacttgagcaacttttctacgttaaggttacagtatgggatataaatatatctttatt...
species | Zea mays |
transcript | GRMZM2G443903_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTTCAAAAGAGAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAG TTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCATTAAAGTCAAAGTTCCEST: gi|18659611|gb|BM500428.1|BM500428
genomic: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttc ... tttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCGTTAAAGTCAAAGTTCC
EST: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAG TTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCATTAAAGTCAAAGTTCCEST: gi|32826913|gb|CD966591.1|CD966591
genomic: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttc ... tttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCGTTAAAGTCAAAGTTCC
EST: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAG TTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGC
genomic: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttc ... tttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGGTGGACCTCTCCCTCAGACTTGGCTTGATGACCAACTAGTTCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttctaccattgtagcatttttggattttgtgcagttacttgagcaacttttctacgttaaggttacagtatgggatataaatatatctttatt
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG