Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcattttttatttctacttgtttatcagtgtccagtttctaccaacatggatatttgggtgagctttaaagggacattagttaggttgggatggaagtg...

Basic information

species Zea mays
transcript GRMZM2G435438_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G435438_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 8
AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcattt-tttatttctacttgt-ttatcagtgtccagtttctaccaacatggatatttgg-----gtgagcttt-aaagggacattagttaggttgggatggaagtg-----------------
||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| |||| ||| || |||||||| |||||||| ||||||||||| | || | |||||||| |  | |||  | | |||  |||  | ||  |   | | || |     ||||  ||| | |    | |   |    | | | |    |                   
AATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGgtaacttatctatttctaatcctgttactattttcccattttaatcataacaaacaatttgctcttgtgatttttcatattttcgtccatccaatggagctaattgatattccatgggtatgcag

upper sequence: GRMZM2G435438_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 8
AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcattttttatttctacttgtttatcagtgtccagtttctaccaacatggatatttg--ggtgagctttaaagggacattagttaggttgggatggaagtg
 |||||||| || ||||| ||||||| |   ||  | ||||  |||||| |||||||||||||||  || |||||||| ||||||||||| |||||||||||    |    | |  |  | | | |   |  | | |   |  | |||   || |||   | ||||   |     |  | |   |   ||    |     | 
GATGTTTGTGGTAGGAGTAAATGAGACTTCATACAAGCCAAGCATGAATATTGTTTCTAATGCAAGCTGTACCACCAATTGCCTTGCTCCTCTTGCCAAGgtttgatagcttattgaactttctgtt--ttgcaaatgattggctacagtaattttttatgatgagaaatggttagctaatgcctgacttcatttatctatt

upper sequence: GRMZM2G435438_T01 (Zea mays), 5'ss of exon 6
lower sequence: PP1S57_242V6.1 (Physcomitrella patens), 5'ss of exon 7
AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcattttttatttctacttgtttatcagtgtccagtttctaccaacatggatatttgggtgagctttaaagggacattag-ttaggttgggatggaagtg--
|||||| ||  | || || |||||||||   ||        | |||||  ||||||||||||| |  |||||||||||||| ||||| |||||||||||||| |        | || | | || |  | | | |   ||    ||| |    ||  | ||| | |   |||  ||   ||  ||    ||| ||   |     
AATGTTCGTCATGGGTGTAAATGAGAATTCGTACACGGATGACATGAACATTGTTTCTAATGCTAGCTGCACCACCAACTGTCTTGCCCCACTTGCCAAGgtgaaccacg--tgcttcgtcttcaatacttttctcctttcttcaagaatattacattggttaaccgaaaacagaggctaaattttcatggtattttaaccag