1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAGTGATGATACAGTGGATTTCATTGGACATGCACTTGCTCTTCATAGAGATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttggccagagttgcttcctagttgttactatggataaacttgtgcttcctaatggtttgaatgtgttttctttatatagttctgttatacttatctatcgtgtgcttttag
species | Zea mays |
transcript | GRMZM2G435373_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|6031345|gb|AW076202.1|AW076202
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGNGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|32938598|gb|CF043417.1|CF043417
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|33094579|gb|CF054573.1|CF054573
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|32939909|gb|CF044728.1|CF044728
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|32856054|gb|CD995735.1|CD995735
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACTGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|32932660|gb|CF037472.1|CF037472
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|47962286|gb|CN844995.1|CN844995
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|211034436|gb|FL381555.1|FL381555
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|211144299|gb|FL377140.1|FL377140
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|211445979|gb|FL406296.1|FL406296
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|211259815|gb|FL426651.1|FL426651
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|32932658|gb|CF037470.1|CF037470
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|211346475|gb|FL413228.1|FL413228
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|33104315|gb|CF064275.1|CF064275
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATEST: gi|32939179|gb|CF043998.1|CF043998
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGATGATACAGTGGATTTCATTGGACATGCACTTGCTCTTCATAGAGATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttggccagagttgcttcctagttgttactatggataaacttgtgcttcctaatggtttgaatgtgttttctttatatagttctgttatacttatctatcgtgtgcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG