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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTGCCATGTCGACTGATGGGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAGgtgataaacgtgttgtggtaatttaatgctacatatgccaatatgctcttttatagcgctgtgctgtggatattgatcacatataaagttttaatagtct...

Basic information

species Zea mays
transcript GRMZM2G426306_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 5
GCACGTGCCATGTCGACTGATGGGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAGgtgataaacgtgttgtggtaatttaatgctacatatgccaatatgctcttttatagcgctgtgctgtggatattgatcacatataaagttttaatagtct------
||||| || ||||| ||||||||||| |||||| |||| |||   ||||| || |||||||||||||| |||||||      ||   |    ||||  | ||    ||   | |       | || |      | |  || | | | || |   || |   ||  | |   |      
GCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAGgtgac---tttgccatccacatttcttactgttgatataattgcttctctctacaaactcatac-atgaa-actcattat-catgacaattggaaaacttgttact