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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttcatgtctgaatcattcattttcaaaaggcaaaaaaaaaactattctattcttgatttcctaaaatgtttcctaatttggtactagaatccacctagtgttgatcatttgtagtgtttagctcgttgtagcttggtgcatagagcccctttctaaatgagtgatgtatatgttccag

Basic information

species Zea mays
transcript GRMZM2G426275_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 5'ss of exon 6
AGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttcatgtctgaat-cattcattttcaaaaggcaaaaaaaaaactattctattcttgatttcctaaaatgtttcctaatttggtactagaatccacctagtgttgatcatttgtagtgtttagctcgttgtagcttggtgcatagagcccctttctaaatgagtgatgtatatgttccag
                       | ||| ||||||||||||||  ||||||||||||||||||||||||||||  | || ||||||||||||||||||||||||| ||  || ||  || | || ||||||| ||  || |        |  ||| || ||| |||    ||     |||||| ||||| | | || ||||  ||                                                                                
-----------------------GCTCCTGTTGCTGCTGTTGTTGTAATGGCTTGCAATCGACCAGACTATTTGCAAAGGACAGTTGAATCTATCCTGAAgtatgctttgtgccttcattcctttattttcagaatccagatttttt-ttggtctgttattgttttttctaa----ctcctaagttggtgccaaaacccactcag--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148986617|gb|EE030388.2|EE030388
EST:     GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAA                         GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
genomic: GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttca ... tatgttccagGTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
EST: gi|211529739|gb|FL258565.1|FL258565
EST:     GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAA                         GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
genomic: GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttca ... tatgttccagGTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
EST: gi|149082839|gb|EE172063.2|EE172063
EST:     GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAA                         GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
genomic: GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttca ... tatgttccagGTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
EST: gi|71439957|gb|DR821007.1|DR821007
EST:     GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAA                         GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
genomic: GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttca ... tatgttccagGTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
EST: gi|76285204|gb|DV024772.1|DV024772
EST:     GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAA                         GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
genomic: GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttca ... tatgttccagGTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
EST: gi|74244431|gb|DT652345.1|DT652345
EST:     GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAA                         GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG
genomic: GCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGAATCTATCCTGAAgtatggttca ... tatgttccagGTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG