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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGATCGACTATGCAAAAAGGGTGCTGATAGCACAAAGTTGAAACTTGTCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactcccaactgaagcatttatacagtatcaagttgcattaaactgaatcaagattgatacgtgagcctcaaaacag

Basic information

species Zea mays
transcript GRMZM2G425986_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6563938|gb|AW231560.1|AW231560
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|78090906|gb|DV519280.1|DV519280
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|76285022|gb|DV024590.1|DV024590
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|76920657|gb|DV168269.1|DV168269
EST:     CAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: CAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|71299538|gb|DR785777.1|DR785777
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTTTTTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|78103467|gb|DV521895.1|DV521895
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|211265288|gb|FL453264.1|FL453264
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|71323966|gb|DR798665.1|DR798665
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|89252623|gb|DY624409.1|DY624409
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGGATCGACTATGCAAAAAGGGTGCTGATAGCACAAAGTTGAAACTTGTCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactcccaactgaagcatttatacagtatcaagttgcattaaactgaatcaagattgatacgtgagcctcaaaacag

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