1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttcttatgacattgacttccatctatggcttcattctgaagactagctgtctgtgatatgtaaatgcatgctgttaacccgtgtttacatcctaatgattgcggactgggtgtgtgttgcag
species | Zea mays |
transcript | GRMZM2G421857_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGNTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTEST: gi|32925234|gb|CF030046.1|CF030046
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211155994|gb|FL123529.1|FL123529
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCAEST: gi|32848240|gb|CD987921.1|CD987921
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCA
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|32910759|gb|CF015571.1|CF015571
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211152790|gb|FL123500.1|FL123500
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT ACTGTTTTTGAGAACEST: gi|148941860|gb|EC886839.2|EC886839
genomic: GTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAAC
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|32934325|gb|CF039137.1|CF039137
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|149070206|gb|EE158608.2|EE158608
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211529163|gb|FL123429.1|FL123429
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACANGGTGGAGATCTATACGCT ACTGGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCCGGEST: gi|211541196|gb|FL123493.1|FL123493
genomic: GTGTTGGAGATGTCATCACA-GGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTG-TTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACC-GG
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACEST: gi|211532178|gb|FL123452.1|FL123452
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACAC
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|32924704|gb|CF029516.1|CF029516
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211152796|gb|FL123506.1|FL123506
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211529167|gb|FL123433.1|FL123433
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|31355789|gb|CD440146.1|CD440146
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211535168|gb|FL123457.1|FL123457
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCCGGGEST: gi|148968185|gb|EE019478.2|EE019478
genomic: GTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACC-GGG
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211152797|gb|FL123507.1|FL123507
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCAEST: gi|211152802|gb|FL123512.1|FL123512
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCA
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGA-CACATTGATGCEST: gi|18654719|gb|BM499524.1|BM499524
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGC
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTCTTTGAGAACACATTGATGCAGCACCATGEST: gi|211156004|gb|FL123539.1|FL123539
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATG
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCCACCGGGEST: gi|148962822|gb|EE013742.2|EE013742
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCC-ACCGGG
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|6021119|gb|AW066047.1|AW066047
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211535166|gb|FL123455.1|FL123455
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|148966031|gb|EE016965.2|EE016965
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|87152921|gb|DY397710.1|DY397710
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|32838453|gb|CD978131.1|CD978131
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211154396|gb|FL123515.1|FL123515
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211532174|gb|FL123448.1|FL123448
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAAC-CATTGATGCAGCEST: gi|211532167|gb|FL123441.1|FL123441
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGC
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|149098348|gb|EE184321.2|EE184321
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|32925687|gb|CF030499.1|CF030499
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|149105608|gb|EE291151.2|EE291151
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTTCC-CCGGGEST: gi|148966043|gb|EE016977.2|EE016977
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTT-CCACCGGG
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|18654718|gb|BM499523.1|BM499523
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|149095258|gb|EE180885.2|EE180885
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|6636981|gb|AW261253.1|AW261253
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211535175|gb|FL123464.1|FL123464
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGEST: gi|32921771|gb|CF026583.1|CF026583
genomic: GTG-TTGGAGATGTCATCACAGG-TGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAG
EST: GTGTTGGAGATGTCATTACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|32838516|gb|CD978194.1|CD978194
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211541200|gb|FL123497.1|FL123497
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTEST: gi|211541195|gb|FL123492.1|FL123492
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttcttatgacattgacttccatctatggcttcattctgaagactagctgtctgtgatatgtaaatgcatgctgttaacccgtgtttacatcctaatgattgcggactgggtgtgtgttgcag
- TTGGAG
- - TGGAGA
- - GGAGAT
- - - GAGATG
- - - - - - - - - - GGTGGA
- - - - - - - - - - GTGGAG
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - GGAGAT
- - - - - - - - - - - - GAGATC