1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTTTGGATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttgatgtagagagctttacccataatgtcctacattttgatggttctataactattcttaaagagagaatctggaaaagatatatgggctgtct...
species | Zea mays |
transcript | GRMZM2G421791_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGACCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|71439406|gb|DR820456.1|DR820456
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|33096912|gb|CF056872.1|CF056872
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAACTTGAGCTTGTTGTGGATCCCTATCTCCTGCTTGAGAG GTTCCTTTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|33099543|gb|CF059503.1|CF059503
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGACCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|13149974|gb|BG320296.1|BG320296
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGAYCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|21760101|gb|BQ635642.1|BQ635642
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGACCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|26559312|gb|CA831547.1|CA831547
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGACCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|211234336|gb|FL414451.1|FL414451
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGACCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACGEST: gi|87156073|gb|DY400862.1|DY400862
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
EST: ATAGATGCAAAGCTTCAGCTTGTTGCGGACCCCTATCTCCTGCTTGAGAG GTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
genomic: ATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttga ... tgcatattagGTTCCTGTGGAGGAAGAATACCACTTTTGCAATCTCTCGGCATTACAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTTTGGATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTGAGAGgtattcttgatgtagagagctttacccataatgtcctacattttgatggttctataactattcttaaagagagaatctggaaaagatatatgggctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagat