Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGGATACATCAATCGGAAAGCCAATTATGGGACCAAACGAAGCTTCATCTTATCCAGAACAGGCTCAGGCATGCCTTGCTAATGATTTCTTGAGAAGgtaaatcatctttgtatgatctgatgattcatttttaactttgtttcttgtggatatttggagttctctagtgatgaaaaaacattatttcaccttgcataatcacccccctctcacttgacttgattctttatttattttatag

Basic information

species Zea mays
transcript GRMZM2G421655_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421655_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 5'ss of exon 25
AAGTGGATACATCAATCGGAAAGCCAATTATGGGACCAAACGAAGCTTCATCTTATCCAGAACAGGCTCAGGCATGCCTTGCTAATGATTTCTTGAGAAGgtaaatcatctttgtatgatctgatgattcatttttaactttgtttcttgtggatatttggagttctctagtgatg-----aaaaaaca--ttattt-caccttgcataatcacccccc-tctcacttgacttgatt--ctttatttattttatag------------------------------------
|||  ||||||||| | | || ||| ||  ||| ||  || ||| ||||| |||  ||||||  || |||| |||| |||||||||||||||||||  |||||||||| | |  ||||||||  |   ||  || | | ||  |||  ||     | ||    |||       |||     ||| ||||  | |||| || ||   | || |||   |  | | |  | |  | |||  || |||||  ||| |                                      
AAGGAGATACATCAGTTGAAAGGCCTATGGTGGTACGGAATGAAACTTCACCTTTCCCAGAAATGGATCAGCCATGTCTTGCTAATGATTTCTTGAAGAGgtaaatcagcgtgatatgatctatt---tcccttgtgagttgtttttgtgcaagcagttatttttcctgcacaatgtatttaaagaacagataatttgcatctataacaaacacttgctattttatgttatgtcatttgctgtattttgtttctcccctgaccaaaacaaattcgttcttctctttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211145564|gb|FL475598.1|FL475598
EST:     GCTCAGGCATGCCTTGCTAATGATTTC-TGAGAAAG                         GTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGG
genomic: GCTCAGGCATGCCTTGCTAATGATTTCTTGAG-AAGgtaaatcatc ... tattttatagGTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGG
EST: gi|67025795|gb|CO454544.1|CO454544
EST:     TCTTATCCAGAACAGGCTCAGGCATGCCTTGCTAATGATTTCTTGAGAAG                         GTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGG
genomic: TCTTATCCAGAACAGGCTCAGGCATGCCTTGCTAATGATTTCTTGAGAAGgtaaatcatc ... tattttatagGTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGG