1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAGgtaaggtctacattaaccacaccaagacaccaagtacacttgcttgttttcatgattcttgttgctcatagtggccaattgacttctacag
species | Zea mays |
transcript | GRMZM2G412937_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAG GAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACCEST: gi|7227483|gb|AW566124.1|AW566124
genomic: TGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAGgtaaggtcta ... acttctacagGAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACC
EST: TGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAG GAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACCEST: gi|67013545|gb|CO442294.1|CO442294
genomic: TGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAGgtaaggtcta ... acttctacagGAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACC
EST: ATTGATAGTGCTGGTGGGATAGTTATGTGGGCAG GAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACCEST: gi|211041804|gb|FL481852.1|FL481852
genomic: ATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAGgtaaggtcta ... acttctacagGAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACC
EST: TGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAG GAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACC
genomic: TGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAGgtaaggtcta ... acttctacagGAACTTGGAGGGTAGGTGGTGTACTTGCGATGTCTCGGGCATTTGGCAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAGgtaaggtctacattaaccacaccaagacaccaagtacacttgcttgttttcatgattcttgttgctcatagtggccaattgacttctacag
- - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG