1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCTTTGATAAGTACCAAGATTTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttgatggtggcccttatactcatgtttttggtatatggacacattatattgcttcatgcatttttacatttataatcagggatcatctcatgcatggacttctttgtttgacaaattattgtttgtgtatatttctaactccatcccattctttttgcag
species | Zea mays |
transcript | GRMZM2G411333_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAG TATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTACEST: gi|91051044|gb|EB161462.1|EB161462
genomic: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttga ... ctttttgcagTATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTAC
EST: ATTATCAAGACTTGGGGTGTTTTCAATTTTCTGGAAG TATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTACEST: gi|5901323|gb|AW042423.1|AW042423
genomic: ATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttga ... ctttttgcagTATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTAC
EST: CTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAG TATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTACEST: gi|71443427|gb|DR824477.1|DR824477
genomic: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttga ... ctttttgcagTATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTAC
EST: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAG TATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTACEST: gi|93283751|gb|EB676015.1|EB676015
genomic: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttga ... ctttttgcagTATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTAC
EST: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAG TATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTACEST: gi|149010273|gb|EE042100.2|EE042100
genomic: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttga ... ctttttgcagTATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTAC
EST: TTCAATTTTCTGGAAG TATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTACEST: gi|50335616|gb|CO530742.1|CO530742
genomic: TTCAATTTTCTGGAAGgtacatttga ... ctttttgcagTATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTAC
EST: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAG TATAGATGATGGATTTCCCGTAATCACCCTTAGTTTTGAGGGAGACCTTAC
genomic: TTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttga ... ctttttgcagTATAGATGATGGATTTCCCGTAATCACCTTTAGTTTTGAGGGAGACCTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTTGATAAGTACCAAGATTTGCCCTTACATAATTATCAAGACTTCGTGTGTTTTCAATTTTCTGGAAGgtacatttgatggtggcccttatactcatgtttttggtatatggacacattatattgcttcatgcatttttacatttataatcagggatcatctcatgcatggacttctttgtttgacaaattattgtttgtgtatatttctaactccatcccattctttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG