1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAATCTAAAGAGCAAATTCTGGGGACAATCCATTCGACTGGATCCTAATGGTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAGgtataattttcttgtcaatggataatactcgtatttttttcttttgattgataactatgcagaaattatcccccctagtttaccatctccattggctgta...
species | Zea mays |
transcript | GRMZM2G409265_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAG GTTACAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCACEST: gi|60344714|gb|DN211687.1|DN211687
genomic: GTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAGgtataatttt ... tccttgtcagGTTACAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCAC
EST: GTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAG GTTACAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCACEST: gi|60344453|gb|DN211426.1|DN211426
genomic: GTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAGgtataatttt ... tccttgtcagGTTACAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCAC
EST: GTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAG GTTACAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCAC
genomic: GTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAGgtataatttt ... tccttgtcagGTTACAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCTAAAGAGCAAATTCTGGGGACAATCCATTCGACTGGATCCTAATGGTGTGCTAACTTTAGAGTTTGATGATGGAGAAACTTTCCAATGGAGTAAGgtataattttcttgtcaatggataatactcgtatttttttcttttgattgataactatgcagaaattatcccccctagtttaccatctccattggctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccct