1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGTGACCCACACTCAAGACGCCTTGTCGTAGACTCTGATTCACCTCAAGAAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttcaactatttttcatcttgaacttttttgtctatgaccaaccttaatgcactataacagaagtctccactgtaaacctacagatagatggtatgttttttccttgagaagttcagatgcattttttagttcatatgtgtgccgtgcag
species | Zea mays |
transcript | GRMZM2G409104_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAG GAAAGTCCCTATCA-GTGGGCATCACGCTGGGAEST: gi|211264101|gb|FK945702.1|FK945702
genomic: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttca ... tgccgtgcagGAAAGTCC-TATCAAGTGGGCATCACGCTGGGA
EST: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAG GAAAGTCCTATCAAGTGGGCGTCACGCTGGGACACCTACCTTCTGATGGCAEST: gi|211264100|gb|FK945701.1|FK945701
genomic: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttca ... tgccgtgcagGAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTGATGGCA
EST: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAG GAAAGTCCTATCAAGTGGGCGTCACGCTGGGACACCTACCTTCTGATGGCAEST: gi|149096266|gb|EE181975.2|EE181975
genomic: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttca ... tgccgtgcagGAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTGATGGCA
EST: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAG GAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTGEST: gi|91871094|gb|EB401239.1|EB401239
genomic: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttca ... tgccgtgcagGAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTG
EST: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAG GAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTGATGGCAEST: gi|31353543|gb|CD437900.1|CD437900
genomic: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttca ... tgccgtgcagGAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTGATGGCA
EST: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAG GAAAGTCCTATCAAGTGGGCGTCACGCTGGGACACCTACCTTCTGATGGCA
genomic: AAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttca ... tgccgtgcagGAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTGATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGACCCACACTCAAGACGCCTTGTCGTAGACTCTGATTCACCTCAAGAAGTAGATGCCAACAAAGAGATCATTTTCACCTATGATATTAACTTTGAGgttagtttcaactatttttcatcttgaacttttttgtctatgaccaaccttaatgcactataacagaagtctccactgtaaacctacagatagatggtatgttttttccttgagaagttcagatgcattttttagttcatatgtgtgccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA