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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAATGAAGCTCCTGGAAGCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctcatatctccacagctttcatttatttgttctagcggaactccaagttgatagatgtcctatctgcag

Basic information

species Zea mays
transcript GRMZM2G408242_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 5
ATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAATGAAGCTCCTGGAAGCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctc--atatctccacagctttcatttatttgttc------tagcggaactccaa----gttgatagatgtcctatctgcag
| ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||||| ||| |||||||||||||| ||||||||||| ||  |||||  | | ||    | ||           ||||||| ||||| |    ||  ||  |||  | || |||   ||        | | || || |||     || | |||||   |   |  ||
ACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAgtaagattctttttccactatcatg--cgatg-------aaacaacattatctttcaccggaattaccgaagcccttatatatactttaaatgaacatcagagctgcaatggtattaacagatgctttgattttag

upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 6
ATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAATGAAGCTCCTGGAAGCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctcatatctccacagctttcatttat-ttgttctagcggaactccaagttgatagatgtcctatctgcag
|| ||| ||| || ||||| || |||||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||| || ||| |  | |  |||||||  | | |||| ||| || ||     | ||||   ||  |    |   | |||   ||  |   | | || || |   ||||   |||  |||  | | ||| |                 
ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaag--tacatttcatgttta-tcatc--tattttactgtatatgtatgtttatcttgcattcc---atccttaatgtgcattgtctcagc--aacctcta-ttgctttc--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211115727|gb|FL229698.1|FL229698
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCGTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCC-TG
EST: gi|211116530|gb|FL229719.1|FL229719
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTNGT-GCAGGATGCTGGCATAACAGACCTGACACATTTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTT-GTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|50333682|gb|CO528808.1|CO528808
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|211117330|gb|FL229739.1|FL229739
EST:     GCTCTCGACTATTATTTGGTTGGTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTTGC-TG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTT-GCCTG
EST: gi|22818772|gb|BU498862.1|BU498862
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|17970138|gb|BM276903.1|BM276903
EST:     GCTCTCGACTATTATTTGGNTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGGGGCCT
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGGGGCCT
EST: gi|5325108|gb|AI783299.1|AI783299
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|148937775|gb|EC881986.2|EC881986
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|6020447|gb|AW065375.1|AW065375
EST:     GCTCTCGACTATTATTTGGTTGNTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|149084617|gb|EE174095.2|EE174095
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|148990759|gb|EE032170.2|EE032170
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|26456727|gb|CA828310.1|CA828310
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|20803321|gb|BQ294371.1|BQ294371
EST:     GCTCTCGACTATTATTTGGTTGCTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGGGGCCT
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGGGGCCT
EST: gi|74237502|gb|DT645416.1|DT645416
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|22521612|gb|BU080423.1|BU080423
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG