Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCGAAGCATACAATGATTACCCTGTCTCAGTGCAAGTCACTGTGGAAACAATTTAAAGCAGAAACTGAGTTCACGATTACAAGCAGTATCCACACAGgtgtgcatttcatacaacatagctttgatttctgatatcagtcagcgtggtgcgacttttttcccttaagggctactttgggaaccttcgggattagagg...

Basic information

species Zea mays
transcript GRMZM2G407913_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G407913_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 19
CCTCCGAAGCATACAATGATTACCCTGTCTCAGTGCAAGTCACTGTGGAAACAATTTAAAGCAGAAACTGAGTTCACGATTACA--AGCAGTATCCACACAGgtgtgcatttcatac-----aacatagctttgatttct-----gatatcagtca---gcgtggtgcgacttttttccctt------aagggctactttgggaaccttcgggattagagg----------------------
  ||| ||| ||||  | || || |  ||||| ||||||||||||||||| || || |||||||||||||||||| | ||||||  ||| || ||||| |||||||| ||     |      |  ||   | || |||||      || |   |||    | ||||  ||  |||| |  ||      ||| |     ||   |    || |                               
--TCCAAAGTATACCCTCATCACTCCTTCTCAATGCAAGTCACTGTGGAAGCAGTTCAAAGCAGAAACTGAGTTCGCCATTACACAAGCGGTTTCCACGCAGgtgtgtatccataatttgggaggatctttatgctttcttccaaaatttggatcacgtacatggtttgatcttttcctatttgatcaaagagtcttattttcatttgtcagttccttgaattttcatctttttttactccag