Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATGTTTTGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATGgtacaattgttgcttcgttctcatagcttcatttacttactctactacccagttcacttatcctgaatatttcttgacttttcccag

Basic information

species Zea mays
transcript GRMZM2G400238_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G400238_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g01190.1 (Oryza sativa), 5'ss of exon 8
GGCATGTTTTGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATGgtacaattgttgcttcgttctcatagcttcatttac--ttactctactacccagttcacttatcctgaatatttcttgacttttcccag
 || || ||||||||||| ||||||||||||||||||||||| ||||||||| | | |||||||| | ||   ||||| ||||||  |||||||||   |       ||| |   |  | |||  |   ||||   ||
AGCGTGCTTTGGTACTACAAAGTATTGCCATGCATGGCTGCGGAACATGgtatactcgttgcttcatcctggcagctttatttaccattactctacctactgccatccttctgagggcttttttcttcttttttttag

upper sequence: GRMZM2G400238_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g01190.3 (Oryza sativa), 5'ss of exon 7
GGCATGTTTTGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATGgtacaattgttgcttcgttctcatagcttcatttac--ttactctactacccagttcacttatcctgaatatttcttgacttttcccag
 || || ||||||||||| ||||||||||||||||||||||| ||||||||| | | |||||||| | ||   ||||| ||||||  |||||||||   |       ||| |   |  | ||   |    |||   ||
AGCGTGCTTTGGTACTACAAAGTATTGCCATGCATGGCTGCGGAACATGgtatactcgttgcttcatcctggcagctttatttaccattactctacctactgccatccttctgagggcttttatcttctcttttttag

upper sequence: GRMZM2G400238_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G45630.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCATGTTTTGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATGgtaca----------attgttgcttcgttctcatagcttcatttacttactctactacccagttcacttatcctgaatatttct--tgacttttcccag--------------------------
|||||||||||| || || |||||||||||||||||| || ||||| |||||            | | ||| |  | ||||    |  ||   | || || | |  |     ||  ||    ||||  || ||  |||  ||                                
GGCATGTTTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTGgtatgccctatatgcactcttgttctgctctctggcccccagaaattttcttt-cagctttcctcttttcagttgaaatttgctactgatattattggaatatggattgtttgttctattcccag

upper sequence: GRMZM2G400238_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT5G60170.2 (Arabidopsis thaliana), 5'ss of exon 7
GGCATGTTTTGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATGgtacaattgttgcttcgttctcatagcttcatttacttactctactacccagttcacttatcctgaatatttc--ttgacttttcccag---------------------------
|||||||||||| || || |||||||| |||||||||||| ||||  |||||    |  |  |   ||||  |   |     |  ||| | |  |    |  || |||    || || ||    ||||  | |                                
GGCATGTTTTGGGACAACCAAGTATTGTCATGCATGGCTGAGAAATGTGgtatgtctccta-tagattcttgttcttctgcgttgttatttt--tgattacctcgcttcagatgcatgttgaagttgatgtctttggagtgatgaactgcatgtttttattccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929612|gb|CF034424.1|CF034424
EST:     ACTACGAAGTATTGCCATGCATGGCTGCGAAACATG                         GCATGTGGGAATCCAGATTGTCTCTATTTGCATGATGTAGGCAGTCAGGAG
genomic: ACTACGAAGTATTGCCATGCATGGCTGCGAAACATGgtacaattgt ... cttttcccagACATGTGGGAATCCAGATTGTCTCTATTTGCATGATGTAGGCAGTCAGGAG