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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCAgtaagttcttgtcacttgtgcagtactactgtactgtacttagcttttttttacgccaagttcactataatataaagtctccagttttagtaaaaaagtaaacgaatttgtgttgtgaaagcactcgccttgtgatcttttttctcccccctgatagtagtaacaattaataaatttgcgcag

Basic information

species Zea mays
transcript GRMZM2G399072_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G399072_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S66_282V6.1 (Physcomitrella patens), 5'ss of exon 6
-----------------------GCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCAgtaagttcttgtcacttgtgcagtactactgtactgtacttagcttttttttacgccaagttcactataatataaagtctccagttttagtaaaaaagtaaacgaatttgtgttgtgaaagcactcgccttgtgatcttttttctcccccctgatagtagtaacaattaataaatttgcgcag
                       ||| || ||||||||||| ||||||||  |||||||| | || || || || |||||||||||||| ||||| | |||| |||    ||      ||  |   | | |    | |    | || | | |       |     | |      |  | | |||||  || | |   |   |      | || |   |  |    ||    |||    | | |    |                                   
TCGATGTACCGAGGGGTGACGAGGCACCATCAGCACGGGAGGTGGCAGGCACGGATTGGGCGCGTGGCCGGGAACAAGGACCTGTACCTGGGCACTTACAgtgagtggcagtttgacttgggggtttgcagaggaggagggggtttgtatgtgttgttgg---gatgtggagggagatgtgcagttgcagcagacgtgggga------tctgatccaacggtcggcgtggcgtgggtgtgtgtgagtcag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472765|gb|EB701723.1|EB701723
EST:     CAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCA                         GCACGCAGGAGGAAGCGGCGGAGGCGTACGACATCGCGGCGATCAAGTTCC
genomic: CAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCAgtaagttctt ... atttgcgcagGCACGCAGGAGGAAGCGGCGGAGGCGTACGACATCGCGGCGATCAAGTTCC
EST: gi|78081130|gb|DV509542.1|DV509542
EST:     CAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCA                         GCACGCAGGAGGAAGCGGCGGAGGCGTACGACATCGCGGCGATCAAGTTCC
genomic: CAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCAgtaagttctt ... atttgcgcagGCACGCAGGAGGAAGCGGCGGAGGCGTACGACATCGCGGCGATCAAGTTCC