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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCCATGCAAACGTTTGCAGGCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCAgtaagttcttgtcacttgtgcagtactactgtactgtacttagcttttttttacgccaagttcactataatataaagtctccagttttagtaaaaaagtaaacgaatttgtgttgtgaaagcactcgccttgtgatcttttttctcccccctgatagtagtaacaattaataaatttgcgcag

Basic information

species Zea mays
transcript GRMZM2G399072_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G399072_T01 (Zea mays), 5'ss of exon 6
lower sequence: PP1S66_282V6.1 (Physcomitrella patens), 5'ss of exon 6
GTTCCCCATGCAAACGTTTGC--AGGCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAATAAGGACCTGTACCTTGGCACATTCAgtaagttcttgtcacttgtgcagtactactgtactgtacttagcttttttttacgccaagttcactataatataaagtctccagttttagtaaaaaagtaaacgaatttgtgttgtgaaagcactcgccttgtgatcttttttctcccccctgatagtagtaacaattaataaatttgcgcag
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--TCGATGTACCGAGGGGTGACGAGGCACCATCAGCACGGGAGGTGGCAGGCACGGATTGGGCGCGTGGCCGGGAACAAGGACCTGTACCTGGGCACTTACAgtgagtggcagtttgacttgggggtttgcagaggaggagggggtttgtatgtgttgttgg---gatgtggagggagatgtgcagttgcagcagacgtgggga------tctgatccaacggtcggcgtggcgtgggtgtgtgtgagtcag---------------------------------