1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTAAGCTTGACAAAGGAGCAGTTCTTAAAGCACTTTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacatttatttccctaatttattcatgttcactgcttacataatctagcttatgcttccaagtgtaatttgcatgtagcatgctcttaatattcattttattttgatcttag
species | Zea mays |
transcript | GRMZM2G389362_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTGCTTGTTTTAAGGAA-CTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAEST: gi|211315830|gb|FK969313.1|FK969313
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAA
EST: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAATGAGTGCCTAGAGAEST: gi|211313814|gb|FK969304.1|FK969304
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAAATGAGTGCCTAGAGA
EST: TTGTS-TGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATAEST: gi|211313815|gb|FK969305.1|FK969305
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATA
EST: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATAEST: gi|32937726|gb|CF042545.1|CF042545
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATA
EST: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATAEST: gi|211313813|gb|FK969303.1|FK969303
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATA
EST: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATAEST: gi|67026759|gb|CO455508.1|CO455508
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATA
EST: TTGTGCTGGTTTTAAGGATACTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATAEST: gi|32937931|gb|CF042750.1|CF042750
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATA
EST: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAG ATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATA
genomic: TTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacat ... ttgatcttagATATACAAACAAATGAGTGCCTAGAGAACAATGGTGGCTGTTGGCAAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGCTTGACAAAGGAGCAGTTCTTAAAGCACTTTGTGCTGGTTTTAAGGAAACTACTGAGCCAGCCGTTTGCTTGAGTGAAGgttggtacatttatttccctaatttattcatgttcactgcttacataatctagcttatgcttccaagtgtaatttgcatgtagcatgctcttaatattcattttattttgatcttag
- - - - - - - - - - - - - - - - - - - - - - - AAGGAA