1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctcctgacttttgaagctcattcatgtgtgtcagatatttgctctgttgtttgagttagttgcctgtgcggtgcatggcgcagagattggaac...
species | Zea mays |
transcript | GRMZM2G381051_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|24763821|gb|CA398992.1|CA398992
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|148928298|gb|EE284912.2|EE284912
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|37375704|gb|CF624307.1|CF624307
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: CCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|148949902|gb|EC895400.2|EC895400
genomic: CCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|31352282|gb|CD436639.1|CD436639
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|60356707|gb|DN223680.1|DN223680
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|8576983|gb|BE129620.1|BE129620
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|40333885|gb|CK367955.1|CK367955
genomic: TCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|16925518|gb|BM078586.1|BM078586
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGCGAAAATGT-CTCGGTGAAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTGEST: gi|37394249|gb|CF634396.1|CF634396
genomic: TGCGAAAATGTCCTCGGTG-AAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
EST: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAG GTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
genomic: TGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctc ... cttgtggcagGTGTTTATGTCATGATGTCAGGGCTTGATCTGGAAAGGCTTGTATTAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGAGCTTGTTTTTGAGAACTGCTTTGTGCCATGCGAAAATGTCCTCGGTGAAGAAGGCAAAGgtattatctcctgacttttgaagctcattcatgtgtgtcagatatttgctctgttgtttgagttagttgcctgtgcggtgcatggcgcagagattggaac
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG