Sequence
atgc intronic sequence ATGC exonic sequenceTGTCGTCAGCATGAAGTGCAAAGCTGAGAAAGTGGACGGTGGCTATGTCCTTAATGGGAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtatttttgctcttcttacattcattcccctatgctttctgcactcctgttatcctgctaattcatccatgttgggattttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G381051_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g03480.2 (Oryza sativa), 5'ss of exon 6
TGTCGTCAGCATGAAGTGCAAAGCTGAGAAAGTGGACGGTGGCTATGTCCTTAATGGGAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtattttt-----gctcttct-tacattcattcccctatgctttctgcactcctgttatcctgctaattcat---ccatgttgggattttacag------
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TGTTGTCAGTATGAAGTGCAAAGCTGAGAAAGTAGATGGTGGTTATGTCATTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctctcaagtccttttgtagattcactccctcatgatatctcctttcatgttccgttttccagtcattagctctgctgggtttttgtctcttggt
upper sequence: GRMZM2G381051_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 7
TGTCGTCAGCATGAAGTGCAAAGCTGAGAAAGTGGACGGTGGCTATGTCCTTAATGGGAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtatttttgctcttcttacatt-cattcccctatgctttctgcactcctgttatcc-tgctaattcatccatgttgggattttacag--------------
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TGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAgtatgattctttaaatttcattgcattttcccatgctctttgcattgactttattcgtgcttgat-atgcctttggaaaactaaaagggcagtgtttccct
upper sequence: GRMZM2G381051_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA11G15900.1 (Glycine max), 5'ss of exon 7
TGTCGTCAGCATGAAGTGCAAAGCTGAGAAAGTGGACGGTGGCTATGTCCTTAATGGGAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgta-----tttttgctcttcttacattcattcccct-atgctttctgcactcctgttatcctgctaa-------ttcatccatgttgggattttacag--
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TGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAgtaagtttctttaaatttcattgcattgactatattcgtgtttgatttgcctttggaaaactaaaagagcagtgtttccctaatttgtaatttcaatgga
upper sequence: GRMZM2G381051_T03 (Zea mays), 5'ss of exon 6
lower sequence: AT3G45300.1 (Arabidopsis thaliana), 5'ss of exon 7
TGTCGTCAGCATGAAGTGCAAAGCTGAGAAAGTGGACGGTGGCTATGTCCTTAATGGGAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtatttttgctcttcttacat-tcattcccctatgct----ttctgcactcctgttatcctgcta--attcatccatgttgggatttta-cag
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TGTTGTTGGCATGAAATGCAAGGCTGAGAAGGTAGATGGTGGTTATATACTAAATGGCAACAAGATGTGGTGCACTAATGGTCCATCTGCTGAAACACTGgtaatatagtttagctcatatgttaacttctgaaactgattttctataattttaacagttttctaccatttgttgtttttttggtttgatcag
upper sequence: GRMZM2G381051_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 5'ss of exon 7
TGTCGTCAGCATGAAGTGCAAAGCTGAGAAAGTGGACGGTGGCTATGTCCTTAATGGGAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtatttttgctcttcttacattcattcccct---atgctttctgcactcctgttatcctgctaattcatccatgttgggattttacag-------------
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TGTTGTTAGTATGAAGTGTAAAGCTGATCGTGTTGATGGGGGTTATATTTTAAATGGAAACAAGATGTGGTGCACCAATGGTCCAATTGCTCAGACACTGgtatcttcattagtattgctttacttacttttgagtgcagctttgattactttatttttctcaagacatatacac-acaatttaactctatcgtggaattgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31352282|gb|CD436639.1|CD436639EST: GAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTG GTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCA
genomic: GAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtatttttgc ... gattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCGTCAGCATGAAGTGCAAAGCTGAGAAAGTGGACGGTGGCTATGTCCTTAATGGGAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtatttttgctcttcttacattcattcccctatgctttctgcactcctgttatcctgctaattcatccatgttgggattttacag
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