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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGGATGACATGAATATTGAGATTATGAGGAATCTCTCTACAAAGCATATCTTGAGGACTTCTACCAATTTTGCTAGgtatgtagtactcgagattatggctttgatgacattttctcaataatcttaattgttatgttgataattagtctactctctaatttctaaatgactattt...

Basic information

species Zea mays
transcript GRMZM2G372709_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G372709_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g40470.1 (Oryza sativa), 5'ss of exon 5
GATTTGGATGACATGAATATTGAGATTATGAGGAAT-CTCTCTACAAAGCATATCTTGAGGACTTCTACCAATTTTGCTAGgtatgtagtactcgag-attatggctttgatgacattttctcaataatcttaattgttatgttgataattagtctactctctaatttctaaatgactattt
|||||||||||||||||||| ||||||||||||||  |||| ||||||||||| ||||||||||| ||| |||| ||  | ||||| | ||| | |  ||  ||||||  |    ||  ||  | |     || |  | || ||||   || || |  | |  |                  
GATTTGGATGACATGAATATCGAGATTATGAGGAACACTCTTTACAAAGCATACCTTGAGGACTTTTACAAATTCTGTGAAgtatgaactacacaaatatagtggcttcaactgtatcctccaatttcatctagtgttcatattgactttttgtgt--tatacag-----------------

upper sequence: GRMZM2G372709_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G28715.2 (Arabidopsis thaliana), 5'ss of exon 5
GATTTGGATGACATGAATATTGAGATTATGAGGAAT-CTCTCTACAAAGCATATCTTGAGGACTTCTACCAATTTTGCTAGgtatgtagta---ctcgagat-tatggctttgatgacattttctcaataatcttaattgttatgttgataattagtctac-tctctaatttct-aaatgactattt-------------
||| | ||||||||||| || ||||||||||||||| | |||||||||||||| |||||||| || ||| | || ||  ||||   ||||     || |||| | |   |||  |       | |||  |        | |||  |      ||  ||||  | ||   | ||| ||||    | ||             
GATCTCGATGACATGAACATAGAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTgtcaggtgcttagtcgacttccagatcttttattttacttttgaaatttcagaatctacctatattagataaccccttcttctatatttcgtgtctctgaaatagaaacttggtggcgcaacag

upper sequence: GRMZM2G372709_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G28710.1 (Arabidopsis thaliana), 5'ss of exon 5
GATTTGGATGACATGAATATTGAGATTATGAGGAAT-CTCTCTACAAAGCATATCTTGAGGACTTCTACCAATTTTGCTAGgtatgtagt--actcgagattatggctttgatgacattttctcaataatcttaattgttatgttgataattagtctactctctaatttctaaatgactattt
||| | ||||||||||| || ||||||||||||||  | |||||||||||||| |||||||| || ||| | || ||  ||||   ||||  |||    | | |   ||  | || ||||      ||    || | | ||     ||  ||  | |  | | |  | |  ||      ||  
GATCTCGATGACATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGgtgcttagttgacttctcaatctattttccagga-atttagaatctacctatactagctaaccccatt-tttttttgttttttgctgttcaatccgaaatag

upper sequence: GRMZM2G372709_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G28715.1 (Arabidopsis thaliana), 5'ss of exon 5
GATTTGGATGACATGAATATTGAGATTATGAGGAAT-CTCTCTACAAAGCATATCTTGAGGACTTCTACCAATTTTGCTAGgtatgtagta---ctcgagat-tatggctttgatgacattttctcaataatcttaattgttatgttgataattagtctac-tctctaatttctaaatgactattt
||| | ||||||||||| || ||||||||||||||| | |||||||||||||| |||||||| || ||| | || ||  ||||   ||||     || |||| | |   |||  |       | |||  |        | |||  |      ||  ||||  | ||   | ||| ||  |      
GATCTCGATGACATGAACATAGAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAGgtgcttagtcgacttccagatcttttattttacttttgaaatttcagaatctacctatattagataaccccttcttctatatttcgtgtctctgaaatag-----

upper sequence: GRMZM2G372709_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv14s0108g00080.t01 (Vitis vinifera), 5'ss of exon 5
GATTTGGATGACATGAATATTGAGATTATGAGGAAT-CTCTCTACAAAGCATATCTTGAGGACTTCTACCAATTTTGCTAGgtatgtagtactcg--agattatggctttgatgacattttctcaataatcttaattgt-------tatgttgataattagtctactctctaat-ttctaaatgac-tattt------------
|| |||||||||||||| ||||| |||||||||||| |||| ||||| ||||| ||||||||||| ||||| |||||  ||||| |   |  | |  | || | |  | | |  |||   |  || ||    ||  | |        ||||  | |  |  | | || ||| ||  | |   | || ||||             
GACTTGGATGACATGAACATTGAAATTATGAGGAATACTCTTTACAAGGCATACCTTGAGGACTTTTACCAGTTTTGTCAGgtaagggctgattgctatatcaagaatataagaacacaataccattatatgtatgtatatatacacatgtcaaaagctctttttctttcttatgctatgtgtaacatattcatttttaattag