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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttttagtgattatctgctaaatctttactaggcatagagtatttgcagttttcttgaatgattgcttggggttgtacagaag...

Basic information

species Zea mays
transcript GRMZM2G366935_T07
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G366935_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttt-tagtgattatctgctaaatctttactaggcatagagtatttgcagttttcttgaatgattgcttggggttgtacagaag
|||||||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||| || | ||||||   ||    | |  |||| ||||||| ||||||||       |||||||||   ||||| |||||| | |||||||||  |||||||||||||||   
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgta---atgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag---

upper sequence: GRMZM2G366935_T05 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttttagtgattatctgctaaatctttactaggcataga-gtatttgcagttttcttgaatgattgcttggggttgtacagaag
|| ||||||| ||  |  | ||||| ||||| |||||||||||||| ||||| ||||| || ||||||| ||||||  |||| ||  | ||||||  |   |||   || ||  |   || ||   | |  |      | || ||||| | ||||  | | ||  | ||| | |||||||  | ||||||   
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaa-aatcatt--ccattttggatttgggtatagatgcatttataatatt--taaataaatgcttggaatggtacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983054|gb|EE028963.2|EE028963
EST:     AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAG                         GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
genomic: AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattc ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
EST: gi|21331443|gb|BQ486824.1|BQ486824
EST:     AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAG                         GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTCG
genomic: AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattc ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
EST: gi|71439614|gb|DR820664.1|DR820664
EST:     AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAG                         GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
genomic: AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattc ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
EST: gi|71426269|gb|DR807319.1|DR807319
EST:     GAGTATATAAAAGTTCCAAGTACAAAG                         GTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
genomic: GAGTATATAAAAGTTCCAAGTACAAAGgtacctattc ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
EST: gi|60345840|gb|DN212813.1|DN212813
EST:     AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAG                         GTTTAGGCTGGAGTTTACCATGTGATATTTGGAGTGTTGGCTGTATTCTTG
genomic: AAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattc ... tctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTG