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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttttagtgattatctgctaaatctttactaggcatagagtatttgcagttttcttgaatgattgcttggggttgtacag

Basic information

species Zea mays
transcript GRMZM2G366935_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttt-tagtgattatctgctaaatctttactaggcatagagtatttgcagttttcttgaatgattgcttggggttgtacag
|||||||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||| || | ||||||   ||    | |  |||| ||||||| ||||||||       |||||||||   ||||| |||||| | |||||||||  |||||||||||||||
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgta---atgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag

upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttttagtgattatctgctaaatctttactaggcataga-gtatttgcagttttcttgaatgattgcttggggttgtacag
|| ||||||| ||  |  | ||||| ||||| |||||||||||||| ||||| ||||| || ||||||| ||||||  |||| ||  | ||||||  |   |||   || ||  |   || ||   | |  |      | || ||||| | ||||  | | ||  | ||| | |||||||  | ||||||
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaa-aatcatt--ccattttggatttgggtatagatgcatttataatatt--taaataaatgcttggaatggtacag