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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGGAAAATAGTAGCACAGgtacagtttcgtttagaaatgcagaattcttactaatatctattgtcttgcctagctctaatgcttgtccaacacttctgctatccttag

Basic information

species Zea mays
transcript GRMZM2G362850_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G362850_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g68320.3 (Oryza sativa), 5'ss of exon 5
TCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGGAAAATAGTAGCACAGgtacagtttcgtttagaaatgcagaattcttactaatatct--attgtcttgcctagctctaatgcttgtccaacacttctgctatccttag
|||||| ||||| || ||||| |||||||| ||  |||||||||| ||||| ||||| || ||||| ||||||||||| ||||| |||||||| ||||||| |  | ||  |||||||       ||   | ||  | | |    |  ||  ||    | |      ||   |||  || || | |   |||
TCACACTAACCTGCGAAGAGTAACATACCTCGTCCTGGATGAGGCTGACCGCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttgttttagaatgcttatatcagttctggtgttttggctaactctccattttttctattgtgctaaacgtttttgttgttaatag

upper sequence: GRMZM2G362850_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G02590.1 (Glycine max), 5'ss of exon 5
TCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGGAAAATAGTAGCACAGgtacagtttcgtttagaaatgcagaattcttactaatatctattgtcttgcctagctctaatgcttgtccaacacttctgctatccttag-------------
 |||||||||||    |||||||| |||||||| |||||||| || || || |||||||| ||||| ||||| || || || |||||||| ||||| |||||||  ||| |     ||      |    ||| || |   || ||        |    |      | |    || || ||  | |||||              
GCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGgtacttttttgcaactaacctgtaacaagttagtactgagtagtggggaaaagaaacattgaatctatttc-catttttg--aaccttaagtgtgctgttgtc

upper sequence: GRMZM2G362850_T01 (Zea mays), 5'ss of exon 6
lower sequence: EDP09760 (Chlamydomonas reinhardtii), 5'ss of exon 4
TCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGGAAAATAGTAGCACAGgtacagtttcgtttagaaa----tgcagaattcttactaatatc---tattgtcttgcctagctctaatgcttgtccaa-cacttctgctatccttag--
   ||| ||||| ||  | ||||||||||| ||| |||| ||||||||||| ||||| || ||||| |||||||| || || || || || || |  |||||   |   ||    | |     || |     |     ||        |  |    ||   ||   ||  |  | ||   |||  | |  |  | ||   
CATCACCAACCTGCGGCGTGTGACATACCTGGTGCTGGACGAGGCGGACCGCATGCTGGACATGGGCTTTGAGCCGCAGATCCGCAAGATTGTGGACCAGgtggggcggcggggcggaggcggtgtatggagcggggcaaggcggggcagggcagggcagggcagcaagccggggccgggcacgacgggcagtcctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354193|gb|CD438550.1|CD438550
EST:     GGATGCTAGATATGGGGTTTGAGCCCCAAATTCGGAAAATAGTAGCACAG                         ATCCGCCCACACAGGCAAACCTTGTACTGGAGTG
genomic: GGATGCTAGATATGGGGTTTGAGCCCCAAATTCGGAAAATAGTAGCACAGgtacagtttc ... ctatccttagATCCGCCCAGACAGGCAAACCTTGTACTGGAGTG