Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgcatttagatatgcttttgtcgttcttttgcttcaaattagttatgcttaccactgcatatactcctgttgatctgcag

Basic information

species Zea mays
transcript GRMZM2G361693_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 5'ss of exon 6
AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtccc-attgcatttagata--tgcttttgtcgttcttttgcttcaaatt-agttatgcttaccactgcatatactcctgttga---tctgcag
 | ||||||||||||||||| ||| |||| ||||| || ||||| ||||||||||| |    ||||||| | |   |  |||| | |||   ||| ||    || | |||   || |     ||||||| ||| || |   | |||||
GACATGGAGAAAGAAATCAGAAAAGAAGTCGATGATGCCATTGCGAAAGCAAAGgttcttgctgcattttgcttctttttttttttgtttacttgttttgctttgaattagattttcactcacatatacccctttttaatatttgcag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G59900.1 (Arabidopsis thaliana), 5'ss of exon 5
----------------------------------------------AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgcatttagatatgcttttgtcgttcttttgcttcaaattagttatgcttaccactgcatatactcctgttgatctgcag
                                               |||||||||| ||||| || ||| ||||||||||||| ||||| ||||| |||||   |   || ||| || | ||  | ||      |    || |     ||||||  |   ||   ||   |               
GAAGCTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGAAATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGgtaaaacaacagttacat-tactactttcaaagcgtaaactcgagacccttatgcgaaaatctctgtaccgtttcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075088|gb|DV503522.1|DV503522
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|33096109|gb|CF056103.1|CF056103
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|76285908|gb|DV025476.1|DV025476
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|71430300|gb|DR811350.1|DR811350
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|91867561|gb|EB399727.1|EB399727
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|76925282|gb|DV170361.1|DV170361
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|50330864|gb|CO525990.1|CO525990
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|60399155|gb|DN231969.1|DN231969
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|22819342|gb|BU499432.1|BU499432
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGCTCTATGCCTGATACTTCTGAACTCTTCACAAATG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATG
EST: gi|149101857|gb|EE187940.2|EE187940
EST:     TGGAGAAAGAAATCAGGAACCAAGTAGATGGCGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|86471503|gb|DY237873.1|DY237873
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|5670884|gb|AI932147.1|AI932147
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|60348121|gb|DN215094.1|DN215094
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|26558514|gb|CA830749.1|CA830749
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATAC
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATAC
EST: gi|40336728|gb|CK370798.1|CK370798
EST:     TGGAGAAAGAAATCAGGAATCAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|67014771|gb|CO443520.1|CO443520
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|6993969|gb|AW453183.1|AW453183
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|89763316|gb|DY690567.1|DY690567
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGTTAAAGCAAAG                         GAAAGTTTTATGCCTGATACTTTTGAACTCTTCCCAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|76021451|gb|DT948621.1|DT948621
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGGCGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTTTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|5847216|gb|AW000295.1|AW000295
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|74233521|gb|DT641435.1|DT641435
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|50332698|gb|CO527824.1|CO527824
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTTTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|71770429|gb|DR968366.1|DR968366
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|37395082|gb|CF634820.1|CF634820
EST:     TGGAGAAAGAAATCAGGAATCAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|50335332|gb|CO530458.1|CO530458
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|71432517|gb|DR813567.1|DR813567
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|5847105|gb|AW000184.1|AW000184
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|5108256|gb|AI739969.1|AI739969
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|50339732|gb|CO534858.1|CO534858
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|71756697|gb|DR954634.1|DR954634
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTTTATGCCTGATACTTTTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|17921802|gb|BM259453.1|BM259453
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|6020670|gb|AW065703.1|AW065703
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|87156670|gb|DY401459.1|DY401459
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACT
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACT
EST: gi|31356997|gb|CD441354.1|CD441354
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|50339733|gb|CO534859.1|CO534859
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|31362510|gb|CD446867.1|CD446867
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|31356922|gb|CD441279.1|CD441279
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|111193578|gb|EE291714.1|EE291714
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGGCGCTATTGCTAAAGCAAAG                         GAAAGTTTTATGCCTGATACTTTTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|78092533|gb|DV520907.1|DV520907
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|17921476|gb|BM259127.1|BM259127
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|24768276|gb|CA403405.1|CA403405
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|74235161|gb|DT643075.1|DT643075
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|71419909|gb|DR804937.1|DR804937
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|31361786|gb|CD446143.1|CD446143
EST:     TGCAGCCCTAAATGAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGATCTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|89252578|gb|DY624364.1|DY624364
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|78123323|gb|DV541707.1|DV541707
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|71323252|gb|DR798280.1|DR798280
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|211364496|gb|FL432826.1|FL432826
EST:     GAAATCAGGAAACAAGTAGATGCCGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: GAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|71312003|gb|DR792517.1|DR792517
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTTTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|84351245|gb|DW245650.1|DW245650
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|88748419|gb|DY532560.1|DY532560
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|33467100|gb|CF244149.1|CF244149
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|149005248|gb|EE039795.2|EE039795
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGTTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|22490952|gb|BU050875.1|BU050875
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|76018760|gb|DT945930.1|DT945930
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|50322896|gb|CO518022.1|CO518022
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|78076521|gb|DV504955.1|DV504955
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGTTAAAGCAAAG                         GAAAGTTTTATGCCTGATACTTTTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG
EST: gi|94474454|gb|EB703412.1|EB703412
EST:     TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAG                         GAAAGTTCTATGCCTGATACTTTTGAACTCTTCACAAATGTTTATAAGAAG
genomic: TGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 141

AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 227

AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 243

AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 342

AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgc ... tgatctgcagGAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCTATTGCTAAAGCAAAGgtcccattgcatttagatatgcttttgtcgttcttttgcttcaaattagttatgcttaccactgcatatactcctgttgatctgcag

- - TGGAGA
- -  GGAGAA
- - - -  AAAGAA
- - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG