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TTGCAGCAAAGATATGGAGAAAATGTGGGACAAGTAATTGATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGGgtatgtgcaaaattctaagttgcgtgtgcattgcatatttcattgctacaagttacatcatatggcagacatgaatacataggcttctttcggcatgatg...
species | Zea mays |
transcript | GRMZM2G361398_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGG GCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGTEST: gi|211148744|gb|FL390440.1|FL390440
genomic: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGGgtatgtgcaa ... tcttccatagGCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGT
EST: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGG GCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGTEST: gi|211461179|gb|FL157812.1|FL157812
genomic: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGGgtatgtgcaa ... tcttccatagGCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGT
EST: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGG GCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGTEST: gi|211231544|gb|FL370986.1|FL370986
genomic: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGGgtatgtgcaa ... tcttccatagGCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGT
EST: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGG GCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGT
genomic: GATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGGgtatgtgcaa ... tcttccatagGCAAATTTTGCATGGGACTGCTAGTGGTTTGTCAGGTACTCCGCAACAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAGCAAAGATATGGAGAAAATGTGGGACAAGTAATTGATCCGAACCAAGCACTATTGAAAGCAGCTGCAGCTGGACAATCCTCTGGgtatgtgcaaaattctaagttgcgtgtgcattgcatatttcattgctacaagttacatcatatggcagacatgaatacataggcttctttcggcatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA