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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgcccctccccctctgtaccaacccattggcatttattttcttccttcttggttctaattattgggaaatcttgggggacatatgcag

Basic information

species Zea mays
transcript GRMZM2G352837_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352837_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgt-tcagtttcttatgcccctccccctctgtaccaacccattggcatttattttcttccttcttggttctaattattgggaaatcttgggggacatatgcag
 || ||||| ||||| ||| |||||| ||| ||||| || ||||||||||||||| | || ||||  ||||| ||||| || || |||||  ||||||||||||    || ||||| | || |    ||       |  |  || | ||||      |   | |    | |  ||||                                 
CGTAGAGTTTTTTGGTACACTGTCAAAAGAATGGGCATTAGAATGCATGAAAGACTTACTGCTGGCCAATCTTAGGGGCAACCTACAGATCATTGTGCAGgtatggtggtgtcagtgttttctataacttggaactt--attaaacaattgttgacaaagctttcttatgtgtgttcag-------------------------------

upper sequence: GRMZM2G352837_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgcccctccccctctgtaccaacccattggcatttattttcttccttcttggttctaattattgggaaatcttgggggacatatgcag
||||||||||||||| ||  | |||||||| |||||| | || || ||||||||||||||||| || |||||  | |  |||||||||||  |||||||||||         ||| | || |     |     |   |     | ||||   |   | ||    |   ||  ||  |   |   |                        
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgta-----aaatagtgttttgtatatgtgattattgattattccacattcataaaaaattgtggctcactaagtcatttgtgcag------------------------

upper sequence: GRMZM2G352837_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 19
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgcccctccccctctgtaccaacccattggcatttattttcttccttc-ttggttctaattattgggaaatcttgggggacatatgcag
||| ||||||||||| ||  | ||| |||| ||||||||||| |||||||| |||||||| ||||| ||||| || || || ||||||||  |||| ||||||  | |  |    |||| |||          ||   | | ||   |   |  ||||||  | | |||  |  |  |  |   ||                        
TGTAGAGTTCTTTGGTACGCTTTCACGAGAATGGGCTTTGGAGTGCATGAAGGACCTTCTTCTGGTCAATCTAAGAGGCAACCTTCAGATAATTGTTCAGgtacccatcattgtcttctgatgga-----tgatccagatcgacttgtaaac--ttatttcttgctttcgctaatattggtctgtgcag---------------------